Clean up and Bug Fixes

Fixes #38 (closed)

Further changes:

• Third party warnings are suppressed now as they just polluted the warning summary in pystencils.
• Removing the math optimisations as they are not used in pystencils. An Issue is created to reintroduce them again in a clean way in the future
• Removing the joblib workaround as joblib is a hard dependency of pystencils
• Fixing SymPy 1.9 as maximum version
• Removing sympy.multiply_elementwise due to https://github.com/sympy/sympy/issues/22353. A workaround with NumPy is introduced which seems to be way more robust because NumPy has a more static API
• Introducing more extra requires, which are needed to have all features of pystencils
• Minor cleanup of some test cases and the datahandling

pystencils_tests/test_kerncraft_coupling.py

@@ -21,6 +21,7 @@ INPUT_FOLDER = SCRIPT_FOLDER / "kerncraft_inputs"
 
 
 @pytest.mark.kerncraft
+@pytest.mark.filterwarnings("ignore::DeprecationWarning")
 def test_compilation():
     machine_file_path = INPUT_FOLDER / "Example_SandyBridgeEP_E5-2680.yml"
     machine = MachineModel(path_to_yaml=machine_file_path)
@@ -58,6 +59,7 @@ def analysis(kernel, machine, model='ecmdata'):
 
 
 @pytest.mark.kerncraft
+@pytest.mark.filterwarnings("ignore::DeprecationWarning")
 def test_3d_7pt_osaca():
 
     size = [20, 200, 200]
@@ -93,6 +95,7 @@ def test_3d_7pt_osaca():
 
 
 @pytest.mark.kerncraft
+@pytest.mark.filterwarnings("ignore::DeprecationWarning")
 def test_2d_5pt():
     machine_file_path = INPUT_FOLDER / "Example_SandyBridgeEP_E5-2680.yml"
     machine = MachineModel(path_to_yaml=machine_file_path)
@@ -119,6 +122,7 @@ def test_2d_5pt():
 
 
 @pytest.mark.kerncraft
+@pytest.mark.filterwarnings("ignore::DeprecationWarning")
 def test_3d_7pt():
     machine_file_path = INPUT_FOLDER / "Example_SandyBridgeEP_E5-2680.yml"
     machine = MachineModel(path_to_yaml=machine_file_path)