test_aligned_array.py

import pytest

from pystencils import create_data_handling
from pystencils.alignedarray import *
from pystencils.field import create_numpy_array_with_layout


def is_aligned(arr, alignment, byte_offset=0):
    address = arr.__array_interface__['data'][0]
    rest = (address + byte_offset) % alignment
    if rest:
        print("Alignment rest", rest)
    return rest == 0


@pytest.mark.parametrize("alignment", [8, 8*4, True])
@pytest.mark.parametrize("shape", [17, 16, (16, 16), (17, 17), (18, 18), (19, 19)])
def test_1d_arrays(alignment, shape):
    arrays = [
        aligned_zeros(shape, alignment),
        aligned_ones(shape, alignment),
        aligned_empty(shape, alignment),
    ]
    for arr in arrays:
        assert is_aligned(arr, alignment)


@pytest.mark.parametrize("order", ['C', 'F'])
@pytest.mark.parametrize("alignment", [8, 8*4, True])
@pytest.mark.parametrize("shape", [(16, 16), (17, 17), (18, 18), (19, 19)])
def test_3d_arrays(order, alignment, shape):
    arrays = [
        aligned_zeros(shape, alignment, order=order),
        aligned_ones(shape, alignment, order=order),
        aligned_empty(shape, alignment, order=order),
    ]
    for arr in arrays:
        assert is_aligned(arr, alignment)
        if order == 'C':
            assert is_aligned(arr[1], alignment)
            assert is_aligned(arr[5], alignment)
        else:
            assert is_aligned(arr[..., 1], alignment)
            assert is_aligned(arr[..., 5], alignment)


@pytest.mark.parametrize("parallel", [False, True])
def test_data_handling(parallel):
    for tries in range(16):  # try a few times, since we might get lucky and get randomly a correct alignment
        dh = create_data_handling((6, 7), default_ghost_layers=1, parallel=parallel)
        dh.add_array('test', alignment=8 * 4, values_per_cell=1)
        for b in dh.iterate(ghost_layers=True, inner_ghost_layers=True):
            arr = b['test']
            assert is_aligned(arr[1:, 3:], 8*4)


def test_alignment_of_different_layouts():
    offset = 1
    byte_offset = 8
    for tries in range(16):  # try a few times, since we might get lucky and get randomly a correct alignment
        arr = create_numpy_array_with_layout((3, 4, 5), layout=(0, 1, 2),
                                             alignment=8*4, byte_offset=byte_offset)
        assert is_aligned(arr[offset, ...], 8*4, byte_offset)

        arr = create_numpy_array_with_layout((3, 4, 5), layout=(2, 1, 0),
                                             alignment=8*4, byte_offset=byte_offset)
        assert is_aligned(arr[..., offset], 8*4, byte_offset)

        arr = create_numpy_array_with_layout((3, 4, 5), layout=(2, 0, 1),
                                             alignment=8*4, byte_offset=byte_offset)
        assert is_aligned(arr[:, 0, :], 8*4, byte_offset)