Skip to content
Snippets Groups Projects
Commit 6471f6fe authored by Markus Holzer's avatar Markus Holzer Committed by Frederik Hennig
Browse files

Refactor build system

parent d88e9cff
No related branches found
No related tags found
1 merge request!163Refactor build system
......@@ -2,4 +2,4 @@
max-line-length=120
exclude=lbmpy/plot.py
lbmpy/session.py
ignore = W293 W503 W291 E741
ignore = W293 W503 W291 C901 E741
......@@ -68,7 +68,7 @@ minimal-conda:
image: i10git.cs.fau.de:5005/pycodegen/pycodegen/minimal_conda
script:
- pip install git+https://gitlab-ci-token:${CI_JOB_TOKEN}@i10git.cs.fau.de/pycodegen/pystencils.git@master#egg=pystencils
- python setup.py quicktest
- python quicktest.py
tags:
- docker
......@@ -140,7 +140,7 @@ minimal-sympy-master:
- pip install git+https://gitlab-ci-token:${CI_JOB_TOKEN}@i10git.cs.fau.de/pycodegen/pystencils.git@master#egg=pystencils
- python -m pip install --upgrade git+https://github.com/sympy/sympy.git
- pip list
- python setup.py quicktest
- python quicktest.py
allow_failure: true
tags:
- docker
......
include README.md
include COPYING.txt
include AUTHORS.txt
include CONTRIBUTING.md
global-include *.pyx
include versioneer.py
include lbmpy/_version.py
include CHANGELOG.md
......@@ -4,10 +4,7 @@ try:
pyximport.install(language_level=3)
from lbmpy.phasefield.simplex_projection import simplex_projection_2d # NOQA
except ImportError:
try:
from lbmpy.phasefield.simplex_projection import simplex_projection_2d # NOQA
except ImportError:
raise ImportError("neither pyximport nor binary module simplex_projection_2d available.")
raise ImportError("pyximport not available. Please install Cython to use simplex_projection_2d.")
import sympy as sp
......
# Workaround for cython bug
# see https://stackoverflow.com/questions/8024805/cython-compiled-c-extension-importerror-dynamic-module-does-not-define-init-fu
WORKAROUND = "Something"
# cython: language_level=3str
import cython
......
[project]
name = "lbmpy"
description = "Code Generation for Lattice Boltzmann Methods"
dynamic = ["version"]
readme = "README.md"
authors = [
{ name = "Martin Bauer" },
{ name = "Markus Holzer" },
{ name = "Frederik Hennig" },
{ email = "cs10-codegen@fau.de" },
]
license = { file = "COPYING.txt" }
requires-python = ">=3.10"
dependencies = ["pystencils>=1.3", "sympy>=1.6,<=1.11.1", "numpy>=1.8.0", "appdirs", "joblib"]
classifiers = [
"Development Status :: 4 - Beta",
"Framework :: Jupyter",
"Topic :: Software Development :: Code Generators",
"Topic :: Scientific/Engineering :: Physics",
"Intended Audience :: Developers",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+)",
]
[project.urls]
"Bug Tracker" = "https://i10git.cs.fau.de/pycodegen/lbmpy/-/issues"
"Documentation" = "https://pycodegen.pages.i10git.cs.fau.de/lbmpy/"
"Source Code" = "https://i10git.cs.fau.de/pycodegen/lbmpy"
[project.optional-dependencies]
gpu = ['cupy']
alltrafos = ['islpy', 'py-cpuinfo']
bench_db = ['blitzdb', 'pymongo', 'pandas']
interactive = [
'matplotlib',
'ipy_table',
'imageio',
'jupyter',
'pyevtk',
'rich',
'graphviz',
'scipy',
'scikit-image'
]
use_cython = [
'Cython'
]
doc = [
'sphinx',
'sphinx_rtd_theme',
'nbsphinx',
'sphinxcontrib-bibtex',
'sphinx_autodoc_typehints',
'pandoc',
]
tests = [
'pytest',
'pytest-cov',
'pytest-html',
'ansi2html',
'pytest-xdist',
'flake8',
'nbformat',
'nbconvert',
'ipython',
'randomgen>=1.18',
]
[build-system]
requires = [
"setuptools>=69",
"versioneer>=0.29",
"tomli; python_version < '3.11'",
]
build-backend = "setuptools.build_meta"
[tool.setuptools.package-data]
[tool.setuptools.packages.find]
where = ["."]
include = ["lbmpy", "lbmpy.*"]
namespaces = false
[tool.versioneer]
# See the docstring in versioneer.py for instructions. Note that you must
# re-run 'versioneer.py setup' after changing this section, and commit the
# resulting files.
VCS = "git"
style = "pep440"
versionfile_source = "lbmpy/_version.py"
versionfile_build = "lbmpy/_version.py"
tag_prefix = "release/"
parentdir_prefix = "lbmpy-"
#!/usr/bin/env python3
from contextlib import redirect_stdout
import io
from lbmpy_tests.test_quicktests import (
test_poiseuille_channel_quicktest,
test_entropic_methods,
test_cumulant_ldc
)
quick_tests = [
test_poiseuille_channel_quicktest,
test_entropic_methods,
test_cumulant_ldc,
]
if __name__ == "__main__":
print("Running lbmpy quicktests")
for qt in quick_tests:
print(f" -> {qt.__name__}")
with redirect_stdout(io.StringIO()):
qt()
# See the docstring in versioneer.py for instructions. Note that you must
# re-run 'versioneer.py setup' after changing this section, and commit the
# resulting files.
[versioneer]
VCS = git
style = pep440
versionfile_source = lbmpy/_version.py
versionfile_build = lbmpy/_version.py
tag_prefix = release/
parentdir_prefix = lbmpy-
\ No newline at end of file
import os
import io
from setuptools import setup, find_packages
import distutils
from contextlib import redirect_stdout
from importlib import import_module
from setuptools import setup, __version__ as setuptools_version
import versioneer
try:
import cython # noqa
USE_CYTHON = True
except ImportError:
USE_CYTHON = False
quick_tests = [
'test_quicktests.test_poiseuille_channel_quicktest',
'test_quicktests.test_entropic_methods',
'test_quicktests.test_cumulant_ldc',
]
class SimpleTestRunner(distutils.cmd.Command):
"""A custom command to run selected tests"""
description = 'run some quick tests'
user_options = []
@staticmethod
def _run_tests_in_module(test):
"""Short test runner function - to work also if py.test is not installed."""
test = 'lbmpy_tests.' + test
mod, function_name = test.rsplit('.', 1)
if isinstance(mod, str):
mod = import_module(mod)
if int(setuptools_version.split('.')[0]) < 61:
raise Exception(
"[ERROR] lbmpy requires at least setuptools version 61 to install.\n"
"If this error occurs during an installation via pip, it is likely that there is a conflict between "
"versions of setuptools installed by pip and the system package manager. "
"In this case, it is recommended to install lbmpy into a virtual environment instead."
)
func = getattr(mod, function_name)
with redirect_stdout(io.StringIO()):
func()
def initialize_options(self):
pass
def finalize_options(self):
pass
def run(self):
"""Run command."""
for test in quick_tests:
self._run_tests_in_module(test)
def readme():
with open('README.md') as f:
return f.read()
def cython_extensions(*extensions):
from distutils.extension import Extension
if USE_CYTHON:
ext = '.pyx'
result = [Extension(e, [os.path.join(*e.split(".")) + ext]) for e in extensions]
from Cython.Build import cythonize
result = cythonize(result, language_level=3)
return result
elif all([os.path.exists(os.path.join(*e.split(".")) + '.c') for e in extensions]):
ext = '.c'
result = [Extension(e, [os.path.join(*e.split(".")) + ext]) for e in extensions]
return result
else:
return None
import versioneer
def get_cmdclass():
cmdclass = {"quicktest": SimpleTestRunner}
cmdclass.update(versioneer.get_cmdclass())
return cmdclass
return versioneer.get_cmdclass()
major_version = versioneer.get_version().split("+")[0]
setup(name='lbmpy',
version=versioneer.get_version(),
description='Code Generation for Lattice Boltzmann Methods',
long_description=readme(),
long_description_content_type="text/markdown",
author='Martin Bauer, Markus Holzer, Frederik Hennig',
license='AGPLv3',
author_email='cs10-codegen@fau.de',
url='https://i10git.cs.fau.de/pycodegen/lbmpy/',
packages=['lbmpy'] + ['lbmpy.' + s for s in find_packages('lbmpy')],
install_requires=[f'pystencils>=0.4.0,<={major_version}', 'sympy>=1.5.1,<=1.11.1', 'numpy>=1.11.0'],
package_data={'lbmpy': ['phasefield/simplex_projection.pyx', 'phasefield/simplex_projection.c']},
ext_modules=cython_extensions("lbmpy.phasefield.simplex_projection"),
classifiers=[
'Development Status :: 4 - Beta',
'Framework :: Jupyter',
'Topic :: Software Development :: Code Generators',
'Topic :: Scientific/Engineering :: Physics',
'Intended Audience :: Developers',
'Intended Audience :: Science/Research',
'License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+)',
],
project_urls={
"Bug Tracker": "https://i10git.cs.fau.de/pycodegen/lbmpy/-/issues",
"Documentation": "https://pycodegen.pages.i10git.cs.fau.de/lbmpy/",
"Source Code": "https://i10git.cs.fau.de/pycodegen/lbmpy",
},
extras_require={
'gpu': ['cupy'],
'opencl': ['pyopencl'],
'alltrafos': ['islpy', 'py-cpuinfo'],
'interactive': ['scipy', 'scikit-image', 'cython', 'matplotlib',
'ipy_table', 'imageio', 'jupyter', 'pyevtk'],
'doc': ['sphinx', 'sphinx_rtd_theme', 'nbsphinx',
'sphinxcontrib-bibtex', 'sphinx_autodoc_typehints', 'pandoc'],
'phasefield': ['Cython']
},
python_requires=">=3.8",
cmdclass=get_cmdclass()
)
setup(
version=versioneer.get_version(),
cmdclass=get_cmdclass(),
)
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Please register or to comment