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Commit ab9e5e47 authored by Martin Bauer's avatar Martin Bauer
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Put phase-field test into function -> otherwise test is executed during py.test collection phase

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lbmpy_tests/phasefield_allen_cahn/test_codegen_3D.py
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from lbmpy.phasefield_allen_cahn.analytical import analytic_rising_speed
from lbmpy.phasefield_allen_cahn.parameter_calculation import calculate_dimensionless_rising_bubble, \
calculate_parameters_rti
from pystencils import fields, AssignmentCollection
from pystencils.simp import sympy_cse
from collections import OrderedDict
import numpy as np
from lbmpy.creationfunctions import create_lb_method, create_lb_update_rule
from lbmpy.stencils import get_stencil
from lbmpy.methods.creationfunctions import create_with_discrete_maxwellian_eq_moments
from lbmpy.phasefield_allen_cahn.kernel_equations import initializer_kernel_hydro_lb, \
initializer_kernel_phase_field_lb, get_collision_assignments_hydro, interface_tracking_force, hydrodynamic_force
from lbmpy.phasefield_allen_cahn.analytical import analytic_rising_speed
from lbmpy.phasefield_allen_cahn.force_model import MultiphaseForceModel
from lbmpy.phasefield_allen_cahn.kernel_equations import (
get_collision_assignments_hydro, hydrodynamic_force, initializer_kernel_hydro_lb, initializer_kernel_phase_field_lb,
interface_tracking_force)
from lbmpy.phasefield_allen_cahn.parameter_calculation import (
calculate_dimensionless_rising_bubble, calculate_parameters_rti)
from lbmpy.stencils import get_stencil
from pystencils import AssignmentCollection, fields
from pystencils.simp import sympy_cse
from collections import OrderedDict
import numpy as np
stencil_phase = get_stencil("D3Q15")
stencil_hydro = get_stencil("D3Q27")
assert (len(stencil_phase[0]) == len(stencil_hydro[0]))
dimensions = len(stencil_hydro[0])
parameters = calculate_dimensionless_rising_bubble(reference_time=18000,
density_heavy=1.0,
bubble_radius=16,
bond_number=30,
reynolds_number=420,
density_ratio=1000,
viscosity_ratio=100)
np.isclose(parameters["density_light"], 0.001, rtol=1e-05, atol=1e-08, equal_nan=False)
np.isclose(parameters["gravitational_acceleration"], -9.876543209876543e-08, rtol=1e-05, atol=1e-08, equal_nan=False)
parameters = calculate_parameters_rti(reference_length=128,
reference_time=18000,
density_heavy=1.0,
capillary_number=9.1,
reynolds_number=128,
atwood_number=1.0,
peclet_number=744,
density_ratio=3,
viscosity_ratio=3)
np.isclose(parameters["density_light"], 1/3, rtol=1e-05, atol=1e-08, equal_nan=False)
np.isclose(parameters["gravitational_acceleration"], -3.9506172839506174e-07, rtol=1e-05, atol=1e-08, equal_nan=False)
np.isclose(parameters["mobility"], 0.0012234169653524492, rtol=1e-05, atol=1e-08, equal_nan=False)
rs = analytic_rising_speed(1-6, 20, 0.01)
np.isclose(rs, 16666.666666666668, rtol=1e-05, atol=1e-08, equal_nan=False)
density_liquid = 1.0
density_gas = 0.001
surface_tension = 0.0001
M = 0.02
# phase-field parameter
drho3 = (density_liquid - density_gas) / 3
# interface thickness
W = 5
# coefficient related to surface tension
beta = 12.0 * (surface_tension / W)
# coefficient related to surface tension
kappa = 1.5 * surface_tension * W
# relaxation rate allen cahn (h)
w_c = 1.0 / (0.5 + (3.0 * M))
# fields
u = fields("vel_field(" + str(dimensions) + "): [" + str(dimensions) + "D]", layout='fzyx')
C = fields("phase_field: [" + str(dimensions) + "D]", layout='fzyx')
force = fields("force(" + str(dimensions) + "): [" + str(dimensions) + "D]", layout='fzyx')
h = fields("lb_phase_field(" + str(len(stencil_phase)) + "): [" + str(dimensions) + "D]", layout='fzyx')
h_tmp = fields("lb_phase_field_tmp(" + str(len(stencil_phase)) + "): [" + str(dimensions) + "D]", layout='fzyx')
g = fields("lb_velocity_field(" + str(len(stencil_hydro)) + "): [" + str(dimensions) + "D]", layout='fzyx')
g_tmp = fields("lb_velocity_field_tmp(" + str(len(stencil_hydro)) + "): [" + str(dimensions) + "D]", layout='fzyx')
# calculate the relaxation rate for the hydro lb as well as the body force
density = density_gas + C.center * (density_liquid - density_gas)
# force acting on all phases of the model
body_force = np.array([0, 1e-6, 0])
relaxation_time = 0.03 + 0.5
relaxation_rate = 1.0 / relaxation_time
method_phase = create_lb_method(stencil=stencil_phase, method='srt', relaxation_rate=w_c, compressible=True)
mrt = create_lb_method(method="mrt", weighted=False, stencil=stencil_hydro,
relaxation_rates=[1, 1, relaxation_rate, 1, 1, 1, 1])
rr_dict = OrderedDict(zip(mrt.moments, mrt.relaxation_rates))
method_hydro = create_with_discrete_maxwellian_eq_moments(stencil_hydro, rr_dict, compressible=False)
# create the kernels for the initialization of the g and h field
h_updates = initializer_kernel_phase_field_lb(h, C, u, method_phase, W)
g_updates = initializer_kernel_hydro_lb(g, u, method_hydro)
force_h = [f / 3 for f in interface_tracking_force(C, stencil_phase, W)]
force_model_h = MultiphaseForceModel(force=force_h)
force_g = hydrodynamic_force(g, C, method_hydro, relaxation_time, density_liquid, density_gas, kappa, beta, body_force)
force_model_g = MultiphaseForceModel(force=force_g, rho=density)
h_tmp_symbol_list = [h_tmp.center(i) for i, _ in enumerate(stencil_phase)]
sum_h = np.sum(h_tmp_symbol_list[:])
method_phase = create_lb_method(stencil=stencil_phase,
method='srt',
relaxation_rate=w_c,
compressible=True,
force_model=force_model_h)
allen_cahn_lb = create_lb_update_rule(lb_method=method_phase,
velocity_input=u,
compressible=True,
optimization={"symbolic_field": h,
"symbolic_temporary_field": h_tmp},
kernel_type='stream_pull_collide')
allen_cahn_lb.set_main_assignments_from_dict({**allen_cahn_lb.main_assignments_dict, **{C.center: sum_h}})
allen_cahn_update_rule = AssignmentCollection(main_assignments=allen_cahn_lb.main_assignments,
subexpressions=allen_cahn_lb.subexpressions)
allen_cahn_update_rule = sympy_cse(allen_cahn_update_rule)
# ---------------------------------------------------------------------------------------------------------
method_hydro = create_with_discrete_maxwellian_eq_moments(stencil_hydro, rr_dict, force_model=force_model_g)
hydro_lb_update_rule = get_collision_assignments_hydro(lb_method=method_hydro,
density=density,
velocity_input=u,
force=force_g,
optimization={"symbolic_field": g,
"symbolic_temporary_field": g_tmp},
kernel_type='collide_only')
# streaming of the hydrodynamic distribution
stream_hydro = create_lb_update_rule(stencil=stencil_hydro,
optimization={"symbolic_field": g,
"symbolic_temporary_field": g_tmp},
kernel_type='stream_pull_only')
def test_codegen_3D():
stencil_phase = get_stencil("D3Q15")
stencil_hydro = get_stencil("D3Q27")
assert (len(stencil_phase[0]) == len(stencil_hydro[0]))
dimensions = len(stencil_hydro[0])
parameters = calculate_dimensionless_rising_bubble(reference_time=18000,
density_heavy=1.0,
bubble_radius=16,
bond_number=30,
reynolds_number=420,
density_ratio=1000,
viscosity_ratio=100)
np.isclose(parameters["density_light"], 0.001, rtol=1e-05, atol=1e-08, equal_nan=False)
np.isclose(parameters["gravitational_acceleration"], -9.876543209876543e-08, rtol=1e-05, atol=1e-08, equal_nan=False)
parameters = calculate_parameters_rti(reference_length=128,
reference_time=18000,
density_heavy=1.0,
capillary_number=9.1,
reynolds_number=128,
atwood_number=1.0,
peclet_number=744,
density_ratio=3,
viscosity_ratio=3)
np.isclose(parameters["density_light"], 1/3, rtol=1e-05, atol=1e-08, equal_nan=False)
np.isclose(parameters["gravitational_acceleration"], -3.9506172839506174e-07, rtol=1e-05, atol=1e-08, equal_nan=False)
np.isclose(parameters["mobility"], 0.0012234169653524492, rtol=1e-05, atol=1e-08, equal_nan=False)
rs = analytic_rising_speed(1-6, 20, 0.01)
np.isclose(rs, 16666.666666666668, rtol=1e-05, atol=1e-08, equal_nan=False)
density_liquid = 1.0
density_gas = 0.001
surface_tension = 0.0001
M = 0.02
# phase-field parameter
drho3 = (density_liquid - density_gas) / 3
# interface thickness
W = 5
# coefficient related to surface tension
beta = 12.0 * (surface_tension / W)
# coefficient related to surface tension
kappa = 1.5 * surface_tension * W
# relaxation rate allen cahn (h)
w_c = 1.0 / (0.5 + (3.0 * M))
# fields
u = fields("vel_field(" + str(dimensions) + "): [" + str(dimensions) + "D]", layout='fzyx')
C = fields("phase_field: [" + str(dimensions) + "D]", layout='fzyx')
force = fields("force(" + str(dimensions) + "): [" + str(dimensions) + "D]", layout='fzyx')
h = fields("lb_phase_field(" + str(len(stencil_phase)) + "): [" + str(dimensions) + "D]", layout='fzyx')
h_tmp = fields("lb_phase_field_tmp(" + str(len(stencil_phase)) + "): [" + str(dimensions) + "D]", layout='fzyx')
g = fields("lb_velocity_field(" + str(len(stencil_hydro)) + "): [" + str(dimensions) + "D]", layout='fzyx')
g_tmp = fields("lb_velocity_field_tmp(" + str(len(stencil_hydro)) + "): [" + str(dimensions) + "D]", layout='fzyx')
# calculate the relaxation rate for the hydro lb as well as the body force
density = density_gas + C.center * (density_liquid - density_gas)
# force acting on all phases of the model
body_force = np.array([0, 1e-6, 0])
relaxation_time = 0.03 + 0.5
relaxation_rate = 1.0 / relaxation_time
method_phase = create_lb_method(stencil=stencil_phase, method='srt', relaxation_rate=w_c, compressible=True)
mrt = create_lb_method(method="mrt", weighted=False, stencil=stencil_hydro,
relaxation_rates=[1, 1, relaxation_rate, 1, 1, 1, 1])
rr_dict = OrderedDict(zip(mrt.moments, mrt.relaxation_rates))
method_hydro = create_with_discrete_maxwellian_eq_moments(stencil_hydro, rr_dict, compressible=False)
# create the kernels for the initialization of the g and h field
h_updates = initializer_kernel_phase_field_lb(h, C, u, method_phase, W)
g_updates = initializer_kernel_hydro_lb(g, u, method_hydro)
force_h = [f / 3 for f in interface_tracking_force(C, stencil_phase, W)]
force_model_h = MultiphaseForceModel(force=force_h)
force_g = hydrodynamic_force(g, C, method_hydro, relaxation_time, density_liquid, density_gas, kappa, beta, body_force)
force_model_g = MultiphaseForceModel(force=force_g, rho=density)
h_tmp_symbol_list = [h_tmp.center(i) for i, _ in enumerate(stencil_phase)]
sum_h = np.sum(h_tmp_symbol_list[:])
method_phase = create_lb_method(stencil=stencil_phase,
method='srt',
relaxation_rate=w_c,
compressible=True,
force_model=force_model_h)
allen_cahn_lb = create_lb_update_rule(lb_method=method_phase,
velocity_input=u,
compressible=True,
optimization={"symbolic_field": h,
"symbolic_temporary_field": h_tmp},
kernel_type='stream_pull_collide')
allen_cahn_lb.set_main_assignments_from_dict({**allen_cahn_lb.main_assignments_dict, **{C.center: sum_h}})
allen_cahn_update_rule = AssignmentCollection(main_assignments=allen_cahn_lb.main_assignments,
subexpressions=allen_cahn_lb.subexpressions)
allen_cahn_update_rule = sympy_cse(allen_cahn_update_rule)
# ---------------------------------------------------------------------------------------------------------
method_hydro = create_with_discrete_maxwellian_eq_moments(stencil_hydro, rr_dict, force_model=force_model_g)
hydro_lb_update_rule = get_collision_assignments_hydro(lb_method=method_hydro,
density=density,
velocity_input=u,
force=force_g,
optimization={"symbolic_field": g,
"symbolic_temporary_field": g_tmp},
kernel_type='collide_only')
# streaming of the hydrodynamic distribution
stream_hydro = create_lb_update_rule(stencil=stencil_hydro,
optimization={"symbolic_field": g,
"symbolic_temporary_field": g_tmp},
kernel_type='stream_pull_only')
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