- counter-based philox RNG: counter/key is filled with cell coordinate
  and optional external parameters like block position and time step
- works on CPU and GPU - on CPU only for non-vectorized versions

- introduced more flexible "CustomCodeNode" that can inject
  backend-specific hand-written code

- removed warnings from generated code
- made generated code string deterministic, generating the same twice
  gives binary equally files now

- small (length < 5) arrays with shape and stride information had to be
  memcpy'd to the GPU before every kernel call
- instead of passing the information as arrays, the single elements are
  passed
- leads to more function arguments, but simplifies GPU kernel calls

-> changes in all backends required

- uses ast instead of text-based editing
- can handle Piecewise defined functions
- new decorator for simplified usage

- removed warnings
- added flake8 as CI target

- test run again
- notebooks not yet

- assignment collection
- sympyextensions

João Victor Tozatti Risso authored 7 years ago and Martin Bauer committed 7 years ago

Concept: Generate code involving the (un)packing of fields (from)to linear
(1D) arrays, i.e. (de)serialization of the field values for buffered
communication.

A linear index is generated for the buffer, by inferring the strides and
variables of the loops over fields in the AST. In the CPU, this information is
obtained through the makeLoopOverDomain function, in
pystencils/transformations/transformations.py. On CUDA, the strides of
the fields (excluding buffers) are combined with the indexing variables to infer
the indexing of the buffer.

What is supported:
    - code generation for both CPU and GPU
    - (un)packing of fields with all the memory layouts supported by
    pystencils
    - (un)packing slices of fields (from)into the buffer
    - (un)packing subsets of cell values from the fields (from)into the buffer

Limitations:

- assumes that only one buffer and one field are being operated within
each kernel, however multiple equations involving the buffer and the
field are supported.

- (un)packing multiple cell values (from)into the buffer is supported,
however it is limited to the fields with indexDimensions=1. The same
applies to (un)packing subset of cell values of each cell.

Changes in this commit:

- add the FieldType enumeration to pystencils/field.py, to mark fields
of various types. This is replaces and is a generalization of the
isIndexedField boolean flag of the Field class. For now, the types
supported are: generic, indexed and buffer fields.

- add the fieldType property to the Field class, which indicates the
type of the field. Modifications were also performed to the member
functions of the Field class to add this property.

- add resolveBufferAccesses function, which replaces the fields marked
as buffers with the actual field access in the AST traversal.

Miscelaneous changes:

- add blockDim and gridDim variables as CUDA indexing variables.

- renaming because of clashes with types.py from other packages