From bcc8d8181082bcb5be41d157accef6f7e839a161 Mon Sep 17 00:00:00 2001
From: Frederik Hennig <frederik.hennig@fau.de>
Date: Tue, 16 Jan 2024 08:50:35 +0100
Subject: [PATCH] Refactor source tree layout
---
.flake8 | 6 +--
.gitignore | 14 +++----
.gitlab-ci.yml | 35 ++++++++++++------
conftest.py | 30 +++++++--------
pyproject.toml | 10 +++--
pytest.ini | 21 ++++++-----
quicktest.py | 2 +-
setup.py | 10 ++++-
{pystencils => src/pystencils}/__init__.py | 0
{pystencils => src/pystencils}/_version.py | 0
.../pystencils}/alignedarray.py | 0
{pystencils => src/pystencils}/assignment.py | 0
{pystencils => src/pystencils}/astnodes.py | 0
.../pystencils}/backends/__init__.py | 0
.../backends/arm_instruction_sets.py | 0
.../pystencils}/backends/cbackend.py | 0
.../pystencils}/backends/cuda_backend.py | 0
.../pystencils}/backends/dot.py | 0
.../pystencils}/backends/json.py | 0
.../backends/ppc_instruction_sets.py | 0
.../backends/riscv_instruction_sets.py | 0
.../backends/simd_instruction_sets.py | 0
.../backends/x86_instruction_sets.py | 0
{pystencils => src/pystencils}/bit_masks.py | 0
.../pystencils}/boundaries/__init__.py | 0
.../boundaries/boundaryconditions.py | 0
.../boundaries/boundaryhandling.py | 0
.../pystencils}/boundaries/createindexlist.py | 0
.../boundaries/createindexlistcython.pyx | 0
.../pystencils}/boundaries/inkernel.py | 0
{pystencils => src/pystencils}/cache.py | 0
{pystencils => src/pystencils}/config.py | 0
.../pystencils}/cpu/__init__.py | 0
{pystencils => src/pystencils}/cpu/cpujit.py | 0
.../pystencils}/cpu/kernelcreation.py | 0
.../pystencils}/cpu/msvc_detection.py | 0
.../pystencils}/cpu/vectorization.py | 0
.../pystencils}/datahandling/__init__.py | 0
.../datahandling/blockiteration.py | 0
.../datahandling/datahandling_interface.py | 0
.../datahandling/parallel_datahandling.py | 0
.../datahandling/serial_datahandling.py | 0
.../pystencils}/datahandling/vtk.py | 0
.../pystencils}/display_utils.py | 0
{pystencils => src/pystencils}/enums.py | 0
.../pystencils}/fast_approximation.py | 0
{pystencils => src/pystencils}/fd/__init__.py | 0
.../pystencils}/fd/derivation.py | 0
.../pystencils}/fd/derivative.py | 0
.../pystencils}/fd/finitedifferences.py | 0
.../pystencils}/fd/finitevolumes.py | 0
{pystencils => src/pystencils}/fd/spatial.py | 0
{pystencils => src/pystencils}/field.py | 0
{pystencils => src/pystencils}/functions.py | 0
.../pystencils}/gpu/__init__.py | 0
.../pystencils}/gpu/gpu_array_handler.py | 0
{pystencils => src/pystencils}/gpu/gpujit.py | 0
.../pystencils}/gpu/indexing.py | 0
.../pystencils}/gpu/kernelcreation.py | 0
.../pystencils}/gpu/periodicity.py | 0
.../pystencils}/include/PyStencilsField.h | 0
.../pystencils}/include/__init__.py | 0
.../pystencils}/include/aesni_rand.h | 0
.../pystencils}/include/arm_neon_helpers.h | 0
.../pystencils}/include/gpu_defines.h | 0
.../pystencils}/include/half_precision.h | 0
.../pystencils}/include/myintrin.h | 0
.../pystencils}/include/philox_rand.h | 0
.../pystencils}/include/ppc_altivec_helpers.h | 0
.../pystencils}/integer_functions.py | 0
.../pystencils}/integer_set_analysis.py | 0
{pystencils => src/pystencils}/jupyter.py | 0
.../pystencils}/kernel_contrains_check.py | 0
.../pystencils}/kernel_decorator.py | 0
.../pystencils}/kernel_wrapper.py | 0
.../pystencils}/kernelcreation.py | 0
.../pystencils}/node_collection.py | 0
.../pystencils}/placeholder_function.py | 0
{pystencils => src/pystencils}/plot.py | 0
{pystencils => src/pystencils}/rng.py | 0
.../pystencils}/runhelper/__init__.py | 0
.../pystencils}/runhelper/db.py | 0
.../pystencils}/runhelper/parameterstudy.py | 0
{pystencils => src/pystencils}/session.py | 0
.../pystencils}/simp/__init__.py | 0
.../pystencils}/simp/assignment_collection.py | 0
.../pystencils}/simp/simplifications.py | 0
.../simp/simplificationstrategy.py | 0
.../simp/subexpression_insertion.py | 0
.../pystencils}/simplificationfactory.py | 0
{pystencils => src/pystencils}/slicing.py | 0
.../pystencils}/spatial_coordinates.py | 0
{pystencils => src/pystencils}/stencil.py | 0
.../pystencils}/sympyextensions.py | 0
{pystencils => src/pystencils}/timeloop.py | 0
.../pystencils}/transformations.py | 0
.../pystencils}/typing/__init__.py | 0
.../pystencils}/typing/cast_functions.py | 0
.../pystencils}/typing/leaf_typing.py | 0
.../pystencils}/typing/transformations.py | 0
.../pystencils}/typing/typed_sympy.py | 0
.../pystencils}/typing/types.py | 0
.../pystencils}/typing/utilities.py | 0
{pystencils => src/pystencils}/utils.py | 0
{pystencils_tests => tests}/__init__.py | 0
{pystencils_tests => tests}/test_Min_Max.py | 0
{pystencils_tests => tests}/test_abs.py | 0
.../test_address_of.py | 0
.../test_aligned_array.py | 0
.../test_assignment_collection.py | 0
...t_assignment_collection_dict_conversion.py | 0
.../test_assignment_from_stencil.py | 0
{pystencils_tests => tests}/test_astnodes.py | 0
.../test_augmented_assignment.py | 0
.../test_base_pointer_specification.py | 0
{pystencils_tests => tests}/test_bit_masks.py | 0
{pystencils_tests => tests}/test_blocking.py | 0
.../test_blocking_staggered.py | 0
{pystencils_tests => tests}/test_boundary.py | 0
.../test_boundary_indexlist_creation.py | 0
{pystencils_tests => tests}/test_buffer.py | 0
.../test_buffer_gpu.py | 0
.../test_conditional_field_access.py | 0
.../test_conditional_vec.py | 0
{pystencils_tests => tests}/test_config.py | 0
.../test_create_kernel_config.py | 0
.../test_custom_backends.py | 0
.../test_data/datahandling_load_test.npz | Bin
.../datahandling_parallel_load_test/dst.dat | Bin
.../datahandling_parallel_load_test/src.dat | Bin
.../datahandling_parallel_save_test/dst.dat | Bin
.../datahandling_parallel_save_test/src.dat | Bin
.../test_data/datahandling_save_test.npz | Bin
.../test_data/lenna.png | Bin
.../test_data/test_vessel2d_mask.png | Bin
.../test_datahandling.py | 0
.../test_datahandling_parallel.py | 2 +-
.../test_derivative.py | 0
.../test_dot_printer.ipynb | 0
.../test_dot_printer.py | 0
.../test_dtype_check.py | 0
.../test_fast_approximation.py | 0
.../test_fd_derivation.ipynb | 0
.../test_fd_derivation_via_rotation.ipynb | 0
.../test_fd_derivative.py | 0
{pystencils_tests => tests}/test_field.py | 0
.../test_field_access_poly.py | 0
.../test_field_equality.ipynb | 0
.../test_finite_differences.py | 0
.../test_floor_ceil_int_optimization.py | 0
{pystencils_tests => tests}/test_fvm.py | 0
.../test_global_definitions.py | 0
{pystencils_tests => tests}/test_gpu.py | 0
.../test_half_precision.py | 0
.../test_helpful_errors.py | 0
.../test_indexed_kernels.py | 0
.../test_jacobi_cbackend.py | 0
.../test_json_backend.py | 0
.../test_json_serializer.py | 0
.../test_jupyter_extensions.ipynb | 0
{pystencils_tests => tests}/test_logarithm.py | 0
.../test_loop_cutting.py | 0
...st_match_subs_for_assignment_collection.py | 0
.../test_math_functions.py | 0
{pystencils_tests => tests}/test_modulo.py | 0
.../test_move_constant_before_loop.py | 0
.../test_nodecollection.py | 0
.../test_parameterstudy.py | 0
.../test_phasefield_dentritic_3D.ipynb | 0
.../test_pickle_support.py | 0
{pystencils_tests => tests}/test_plot.py | 0
{pystencils_tests => tests}/test_printing.py | 0
.../test_quicktests.py | 0
{pystencils_tests => tests}/test_random.py | 0
.../test_sharedmethodcache.py | 0
.../test_simplification_strategy.py | 0
.../test_simplifications.py | 0
.../test_size_and_layout_checks.py | 0
.../test_sliced_iteration.py | 0
{pystencils_tests => tests}/test_slicing.py | 0
.../test_small_block_benchmark.ipynb | 0
.../test_source_code_comment.py | 0
.../test_staggered_kernel.py | 0
.../test_stencil_plot.ipynb | 0
{pystencils_tests => tests}/test_stencils.py | 0
.../test_struct_types.py | 0
.../test_subexpression_insertion.py | 0
{pystencils_tests => tests}/test_sum_prod.py | 0
.../test_sympyextensions.py | 0
{pystencils_tests => tests}/test_timeloop.py | 0
.../test_transformations.py | 0
.../test_type_interference.py | 0
{pystencils_tests => tests}/test_types.py | 0
{pystencils_tests => tests}/test_utils.py | 0
.../test_vectorization.py | 0
.../test_vectorization_specific.py | 0
.../test_version_string.py | 0
197 files changed, 76 insertions(+), 54 deletions(-)
rename {pystencils => src/pystencils}/__init__.py (100%)
rename {pystencils => src/pystencils}/_version.py (100%)
rename {pystencils => src/pystencils}/alignedarray.py (100%)
rename {pystencils => src/pystencils}/assignment.py (100%)
rename {pystencils => src/pystencils}/astnodes.py (100%)
rename {pystencils => src/pystencils}/backends/__init__.py (100%)
rename {pystencils => src/pystencils}/backends/arm_instruction_sets.py (100%)
rename {pystencils => src/pystencils}/backends/cbackend.py (100%)
rename {pystencils => src/pystencils}/backends/cuda_backend.py (100%)
rename {pystencils => src/pystencils}/backends/dot.py (100%)
rename {pystencils => src/pystencils}/backends/json.py (100%)
rename {pystencils => src/pystencils}/backends/ppc_instruction_sets.py (100%)
rename {pystencils => src/pystencils}/backends/riscv_instruction_sets.py (100%)
rename {pystencils => src/pystencils}/backends/simd_instruction_sets.py (100%)
rename {pystencils => src/pystencils}/backends/x86_instruction_sets.py (100%)
rename {pystencils => src/pystencils}/bit_masks.py (100%)
rename {pystencils => src/pystencils}/boundaries/__init__.py (100%)
rename {pystencils => src/pystencils}/boundaries/boundaryconditions.py (100%)
rename {pystencils => src/pystencils}/boundaries/boundaryhandling.py (100%)
rename {pystencils => src/pystencils}/boundaries/createindexlist.py (100%)
rename {pystencils => src/pystencils}/boundaries/createindexlistcython.pyx (100%)
rename {pystencils => src/pystencils}/boundaries/inkernel.py (100%)
rename {pystencils => src/pystencils}/cache.py (100%)
rename {pystencils => src/pystencils}/config.py (100%)
rename {pystencils => src/pystencils}/cpu/__init__.py (100%)
rename {pystencils => src/pystencils}/cpu/cpujit.py (100%)
rename {pystencils => src/pystencils}/cpu/kernelcreation.py (100%)
rename {pystencils => src/pystencils}/cpu/msvc_detection.py (100%)
rename {pystencils => src/pystencils}/cpu/vectorization.py (100%)
rename {pystencils => src/pystencils}/datahandling/__init__.py (100%)
rename {pystencils => src/pystencils}/datahandling/blockiteration.py (100%)
rename {pystencils => src/pystencils}/datahandling/datahandling_interface.py (100%)
rename {pystencils => src/pystencils}/datahandling/parallel_datahandling.py (100%)
rename {pystencils => src/pystencils}/datahandling/serial_datahandling.py (100%)
rename {pystencils => src/pystencils}/datahandling/vtk.py (100%)
rename {pystencils => src/pystencils}/display_utils.py (100%)
rename {pystencils => src/pystencils}/enums.py (100%)
rename {pystencils => src/pystencils}/fast_approximation.py (100%)
rename {pystencils => src/pystencils}/fd/__init__.py (100%)
rename {pystencils => src/pystencils}/fd/derivation.py (100%)
rename {pystencils => src/pystencils}/fd/derivative.py (100%)
rename {pystencils => src/pystencils}/fd/finitedifferences.py (100%)
rename {pystencils => src/pystencils}/fd/finitevolumes.py (100%)
rename {pystencils => src/pystencils}/fd/spatial.py (100%)
rename {pystencils => src/pystencils}/field.py (100%)
rename {pystencils => src/pystencils}/functions.py (100%)
rename {pystencils => src/pystencils}/gpu/__init__.py (100%)
rename {pystencils => src/pystencils}/gpu/gpu_array_handler.py (100%)
rename {pystencils => src/pystencils}/gpu/gpujit.py (100%)
rename {pystencils => src/pystencils}/gpu/indexing.py (100%)
rename {pystencils => src/pystencils}/gpu/kernelcreation.py (100%)
rename {pystencils => src/pystencils}/gpu/periodicity.py (100%)
rename {pystencils => src/pystencils}/include/PyStencilsField.h (100%)
rename {pystencils => src/pystencils}/include/__init__.py (100%)
rename {pystencils => src/pystencils}/include/aesni_rand.h (100%)
rename {pystencils => src/pystencils}/include/arm_neon_helpers.h (100%)
rename {pystencils => src/pystencils}/include/gpu_defines.h (100%)
rename {pystencils => src/pystencils}/include/half_precision.h (100%)
rename {pystencils => src/pystencils}/include/myintrin.h (100%)
rename {pystencils => src/pystencils}/include/philox_rand.h (100%)
rename {pystencils => src/pystencils}/include/ppc_altivec_helpers.h (100%)
rename {pystencils => src/pystencils}/integer_functions.py (100%)
rename {pystencils => src/pystencils}/integer_set_analysis.py (100%)
rename {pystencils => src/pystencils}/jupyter.py (100%)
rename {pystencils => src/pystencils}/kernel_contrains_check.py (100%)
rename {pystencils => src/pystencils}/kernel_decorator.py (100%)
rename {pystencils => src/pystencils}/kernel_wrapper.py (100%)
rename {pystencils => src/pystencils}/kernelcreation.py (100%)
rename {pystencils => src/pystencils}/node_collection.py (100%)
rename {pystencils => src/pystencils}/placeholder_function.py (100%)
rename {pystencils => src/pystencils}/plot.py (100%)
rename {pystencils => src/pystencils}/rng.py (100%)
rename {pystencils => src/pystencils}/runhelper/__init__.py (100%)
rename {pystencils => src/pystencils}/runhelper/db.py (100%)
rename {pystencils => src/pystencils}/runhelper/parameterstudy.py (100%)
rename {pystencils => src/pystencils}/session.py (100%)
rename {pystencils => src/pystencils}/simp/__init__.py (100%)
rename {pystencils => src/pystencils}/simp/assignment_collection.py (100%)
rename {pystencils => src/pystencils}/simp/simplifications.py (100%)
rename {pystencils => src/pystencils}/simp/simplificationstrategy.py (100%)
rename {pystencils => src/pystencils}/simp/subexpression_insertion.py (100%)
rename {pystencils => src/pystencils}/simplificationfactory.py (100%)
rename {pystencils => src/pystencils}/slicing.py (100%)
rename {pystencils => src/pystencils}/spatial_coordinates.py (100%)
rename {pystencils => src/pystencils}/stencil.py (100%)
rename {pystencils => src/pystencils}/sympyextensions.py (100%)
rename {pystencils => src/pystencils}/timeloop.py (100%)
rename {pystencils => src/pystencils}/transformations.py (100%)
rename {pystencils => src/pystencils}/typing/__init__.py (100%)
rename {pystencils => src/pystencils}/typing/cast_functions.py (100%)
rename {pystencils => src/pystencils}/typing/leaf_typing.py (100%)
rename {pystencils => src/pystencils}/typing/transformations.py (100%)
rename {pystencils => src/pystencils}/typing/typed_sympy.py (100%)
rename {pystencils => src/pystencils}/typing/types.py (100%)
rename {pystencils => src/pystencils}/typing/utilities.py (100%)
rename {pystencils => src/pystencils}/utils.py (100%)
rename {pystencils_tests => tests}/__init__.py (100%)
rename {pystencils_tests => tests}/test_Min_Max.py (100%)
rename {pystencils_tests => tests}/test_abs.py (100%)
rename {pystencils_tests => tests}/test_address_of.py (100%)
rename {pystencils_tests => tests}/test_aligned_array.py (100%)
rename {pystencils_tests => tests}/test_assignment_collection.py (100%)
rename {pystencils_tests => tests}/test_assignment_collection_dict_conversion.py (100%)
rename {pystencils_tests => tests}/test_assignment_from_stencil.py (100%)
rename {pystencils_tests => tests}/test_astnodes.py (100%)
rename {pystencils_tests => tests}/test_augmented_assignment.py (100%)
rename {pystencils_tests => tests}/test_base_pointer_specification.py (100%)
rename {pystencils_tests => tests}/test_bit_masks.py (100%)
rename {pystencils_tests => tests}/test_blocking.py (100%)
rename {pystencils_tests => tests}/test_blocking_staggered.py (100%)
rename {pystencils_tests => tests}/test_boundary.py (100%)
rename {pystencils_tests => tests}/test_boundary_indexlist_creation.py (100%)
rename {pystencils_tests => tests}/test_buffer.py (100%)
rename {pystencils_tests => tests}/test_buffer_gpu.py (100%)
rename {pystencils_tests => tests}/test_conditional_field_access.py (100%)
rename {pystencils_tests => tests}/test_conditional_vec.py (100%)
rename {pystencils_tests => tests}/test_config.py (100%)
rename {pystencils_tests => tests}/test_create_kernel_config.py (100%)
rename {pystencils_tests => tests}/test_custom_backends.py (100%)
rename {pystencils_tests => tests}/test_data/datahandling_load_test.npz (100%)
rename {pystencils_tests => tests}/test_data/datahandling_parallel_load_test/dst.dat (100%)
rename {pystencils_tests => tests}/test_data/datahandling_parallel_load_test/src.dat (100%)
rename {pystencils_tests => tests}/test_data/datahandling_parallel_save_test/dst.dat (100%)
rename {pystencils_tests => tests}/test_data/datahandling_parallel_save_test/src.dat (100%)
rename {pystencils_tests => tests}/test_data/datahandling_save_test.npz (100%)
rename {pystencils_tests => tests}/test_data/lenna.png (100%)
rename {pystencils_tests => tests}/test_data/test_vessel2d_mask.png (100%)
rename {pystencils_tests => tests}/test_datahandling.py (100%)
rename {pystencils_tests => tests}/test_datahandling_parallel.py (99%)
rename {pystencils_tests => tests}/test_derivative.py (100%)
rename {pystencils_tests => tests}/test_dot_printer.ipynb (100%)
rename {pystencils_tests => tests}/test_dot_printer.py (100%)
rename {pystencils_tests => tests}/test_dtype_check.py (100%)
rename {pystencils_tests => tests}/test_fast_approximation.py (100%)
rename {pystencils_tests => tests}/test_fd_derivation.ipynb (100%)
rename {pystencils_tests => tests}/test_fd_derivation_via_rotation.ipynb (100%)
rename {pystencils_tests => tests}/test_fd_derivative.py (100%)
rename {pystencils_tests => tests}/test_field.py (100%)
rename {pystencils_tests => tests}/test_field_access_poly.py (100%)
rename {pystencils_tests => tests}/test_field_equality.ipynb (100%)
rename {pystencils_tests => tests}/test_finite_differences.py (100%)
rename {pystencils_tests => tests}/test_floor_ceil_int_optimization.py (100%)
rename {pystencils_tests => tests}/test_fvm.py (100%)
rename {pystencils_tests => tests}/test_global_definitions.py (100%)
rename {pystencils_tests => tests}/test_gpu.py (100%)
rename {pystencils_tests => tests}/test_half_precision.py (100%)
rename {pystencils_tests => tests}/test_helpful_errors.py (100%)
rename {pystencils_tests => tests}/test_indexed_kernels.py (100%)
rename {pystencils_tests => tests}/test_jacobi_cbackend.py (100%)
rename {pystencils_tests => tests}/test_json_backend.py (100%)
rename {pystencils_tests => tests}/test_json_serializer.py (100%)
rename {pystencils_tests => tests}/test_jupyter_extensions.ipynb (100%)
rename {pystencils_tests => tests}/test_logarithm.py (100%)
rename {pystencils_tests => tests}/test_loop_cutting.py (100%)
rename {pystencils_tests => tests}/test_match_subs_for_assignment_collection.py (100%)
rename {pystencils_tests => tests}/test_math_functions.py (100%)
rename {pystencils_tests => tests}/test_modulo.py (100%)
rename {pystencils_tests => tests}/test_move_constant_before_loop.py (100%)
rename {pystencils_tests => tests}/test_nodecollection.py (100%)
rename {pystencils_tests => tests}/test_parameterstudy.py (100%)
rename {pystencils_tests => tests}/test_phasefield_dentritic_3D.ipynb (100%)
rename {pystencils_tests => tests}/test_pickle_support.py (100%)
rename {pystencils_tests => tests}/test_plot.py (100%)
rename {pystencils_tests => tests}/test_printing.py (100%)
rename {pystencils_tests => tests}/test_quicktests.py (100%)
rename {pystencils_tests => tests}/test_random.py (100%)
rename {pystencils_tests => tests}/test_sharedmethodcache.py (100%)
rename {pystencils_tests => tests}/test_simplification_strategy.py (100%)
rename {pystencils_tests => tests}/test_simplifications.py (100%)
rename {pystencils_tests => tests}/test_size_and_layout_checks.py (100%)
rename {pystencils_tests => tests}/test_sliced_iteration.py (100%)
rename {pystencils_tests => tests}/test_slicing.py (100%)
rename {pystencils_tests => tests}/test_small_block_benchmark.ipynb (100%)
rename {pystencils_tests => tests}/test_source_code_comment.py (100%)
rename {pystencils_tests => tests}/test_staggered_kernel.py (100%)
rename {pystencils_tests => tests}/test_stencil_plot.ipynb (100%)
rename {pystencils_tests => tests}/test_stencils.py (100%)
rename {pystencils_tests => tests}/test_struct_types.py (100%)
rename {pystencils_tests => tests}/test_subexpression_insertion.py (100%)
rename {pystencils_tests => tests}/test_sum_prod.py (100%)
rename {pystencils_tests => tests}/test_sympyextensions.py (100%)
rename {pystencils_tests => tests}/test_timeloop.py (100%)
rename {pystencils_tests => tests}/test_transformations.py (100%)
rename {pystencils_tests => tests}/test_type_interference.py (100%)
rename {pystencils_tests => tests}/test_types.py (100%)
rename {pystencils_tests => tests}/test_utils.py (100%)
rename {pystencils_tests => tests}/test_vectorization.py (100%)
rename {pystencils_tests => tests}/test_vectorization_specific.py (100%)
rename {pystencils_tests => tests}/test_version_string.py (100%)
diff --git a/.flake8 b/.flake8
index 5701df707..8b65d20eb 100644
--- a/.flake8
+++ b/.flake8
@@ -1,6 +1,6 @@
[flake8]
max-line-length=120
-exclude=pystencils/jupyter.py,
- pystencils/plot.py
- pystencils/session.py
+exclude=src/pystencils/jupyter.py,
+ src/pystencils/plot.py
+ src/pystencils/session.py
ignore = W293 W503 W291 C901 E741
diff --git a/.gitignore b/.gitignore
index e6e71f76d..992284e7d 100644
--- a/.gitignore
+++ b/.gitignore
@@ -5,7 +5,7 @@ __pycache__
*.vti
/build
/dist
-/*.egg-info
+*.egg-info
.cache
_build
/html_doc
@@ -15,12 +15,12 @@ _build
_local_tmp
RELEASE-VERSION
test-report
-pystencils/boundaries/createindexlistcython.c
-pystencils/boundaries/createindexlistcython.*.so
-pystencils_tests/tmp
-pystencils_tests/var
-pystencils_tests/kerncraft_inputs/.2d-5pt.c_kerncraft/
-pystencils_tests/kerncraft_inputs/.3d-7pt.c_kerncraft/
+src/pystencils/boundaries/createindexlistcython.c
+src/pystencils/boundaries/createindexlistcython.*.so
+tests/tmp
+tests/var
+tests/kerncraft_inputs/.2d-5pt.c_kerncraft/
+tests/kerncraft_inputs/.3d-7pt.c_kerncraft/
report.xml
coverage_report/
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 3680e33aa..c05cdb088 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -13,16 +13,17 @@ tests-and-coverage:
variables:
- $ENABLE_NIGHTLY_BUILDS
image: i10git.cs.fau.de:5005/pycodegen/pycodegen/full
+ before_script:
+ - pip install -e .
script:
- - pip install sympy --upgrade
- env
- pip list
- export NUM_CORES=$(nproc --all)
- mkdir -p ~/.config/matplotlib
- echo "backend:template" > ~/.config/matplotlib/matplotlibrc
- mkdir public
- - py.test -v -n $NUM_CORES --cov-report html --cov-report xml --cov-report term --cov=. -m "not longrun" --html test-report/index.html --junitxml=report.xml
- - python3 -m coverage xml
+ - pytest -v -n $NUM_CORES --cov-report html --cov-report xml --cov-report term --cov=. -m "not longrun" --html test-report/index.html --junitxml=report.xml
+ - python -m coverage xml
tags:
- docker
- cuda11
@@ -45,8 +46,10 @@ tests-and-coverage-with-longrun:
when: manual
allow_failure: true
image: i10git.cs.fau.de:5005/pycodegen/pycodegen/full
- script:
+ before_script:
- pip install sympy --upgrade
+ - pip install -e .
+ script:
- env
- pip list
- export NUM_CORES=$(nproc --all)
@@ -66,9 +69,12 @@ latest-python:
variables:
- $ENABLE_NIGHTLY_BUILDS
image: i10git.cs.fau.de:5005/pycodegen/pycodegen/latest_python
+ before_script:
+ - pip install -e .
script:
- env
- pip list
+ - pip install -e .
- export NUM_CORES=$(nproc --all)
- mkdir -p ~/.config/matplotlib
- echo "backend:template" > ~/.config/matplotlib/matplotlibrc
@@ -107,18 +113,16 @@ ubuntu:
- $ENABLE_NIGHTLY_BUILDS
image: i10git.cs.fau.de:5005/pycodegen/pycodegen/ubuntu
before_script:
- - apt-get -y remove python3-sympy
- ln -s /usr/include/locale.h /usr/include/xlocale.h
- - pip3 install `grep -Eo 'sympy[>=]+[0-9\.]+' pyproject.toml | sed 's/>/=/g'`
- # - pip3 install `grep -Eo 'sympy[>=]+[0-9\.]+' setup.py | sed 's/>/=/g'`
+ - pip3 install -e .
script:
- export NUM_CORES=$(nproc --all)
- mkdir -p ~/.config/matplotlib
- echo "backend:template" > ~/.config/matplotlib/matplotlibrc
- sed -i 's/--doctest-modules //g' pytest.ini
- env
- - pip3 list
- - pytest-3 -v -n $NUM_CORES -m "not longrun" --junitxml=report.xml
+ - pip list
+ - pytest -v -n $NUM_CORES -m "not longrun" --junitxml=report.xml
tags:
- docker
- cuda11
@@ -134,6 +138,8 @@ ubuntu:
variables:
- $ENABLE_NIGHTLY_BUILDS
before_script: &multiarch_before_script
+ # - pip3 install -v .
+ - export PYTHONPATH=src
- python3 -c "import pystencils as ps; ps.cpu.cpujit.read_config()"
- sed -i '/^fail_under.*/d' pytest.ini
script:
@@ -143,7 +149,7 @@ ubuntu:
- sed -i 's/--doctest-modules //g' pytest.ini
- env
- pip3 list
- - pytest-3 -v -n $NUM_CORES --junitxml=report.xml pystencils_tests/test_*vec*.py pystencils_tests/test_random.py pystencils_tests/test_half_precision.py
+ - python3 -m pytest -v -n $NUM_CORES --junitxml=report.xml tests/test_*vec*.py tests/test_random.py tests/test_half_precision.py
tags:
- docker
- AVX
@@ -199,6 +205,8 @@ minimal-conda:
variables:
- $ENABLE_NIGHTLY_BUILDS
image: i10git.cs.fau.de:5005/pycodegen/pycodegen/minimal_conda
+ before_script:
+ - pip install -e .
script:
- python quicktest.py
tags:
@@ -212,6 +220,8 @@ minimal-sympy-master:
variables:
- $ENABLE_NIGHTLY_BUILDS
image: i10git.cs.fau.de:5005/pycodegen/pycodegen/minimal_conda
+ before_script:
+ - pip install -e .
script:
- python -m pip install --upgrade git+https://github.com/sympy/sympy.git
- python quicktest.py
@@ -275,7 +285,7 @@ flake8-lint:
- $ENABLE_NIGHTLY_BUILDS
image: i10git.cs.fau.de:5005/pycodegen/pycodegen/full
script:
- - flake8 pystencils
+ - flake8 src/pystencils
tags:
- docker
@@ -283,8 +293,9 @@ flake8-lint:
build-documentation:
stage: test
image: i10git.cs.fau.de:5005/pycodegen/pycodegen/documentation
+ before_script:
+ - pip install -e .
script:
- - export PYTHONPATH=`pwd`
- mkdir html_doc
- sphinx-build -b html doc html_doc
- sphinx-build -W -b html doc html_doc
diff --git a/conftest.py b/conftest.py
index 040ddf595..70f4f241f 100644
--- a/conftest.py
+++ b/conftest.py
@@ -8,7 +8,7 @@ import nbformat
import pytest
from nbconvert import PythonExporter
-from pystencils.boundaries.createindexlistcython import * # NOQA
+from pystencils.boundaries.createindexlist import * # NOQA
# Trigger config file reading / creation once - to avoid race conditions when multiple instances are creating it
# at the same time
from pystencils.cpu import cpujit
@@ -40,48 +40,48 @@ def add_path_to_ignore(path):
collect_ignore = [os.path.join(SCRIPT_FOLDER, "doc", "conf.py"),
- os.path.join(SCRIPT_FOLDER, "pystencils", "opencl", "opencl.autoinit")]
-add_path_to_ignore('pystencils_tests/benchmark')
+ os.path.join(SCRIPT_FOLDER, "src", "pystencils", "opencl", "opencl.autoinit")]
+add_path_to_ignore('tests/benchmark')
add_path_to_ignore('_local_tmp')
try:
import cupy
except ImportError:
- collect_ignore += [os.path.join(SCRIPT_FOLDER, "pystencils_tests/test_gpu.py")]
- add_path_to_ignore('pystencils/gpu')
+ collect_ignore += [os.path.join(SCRIPT_FOLDER, "tests/test_gpu.py")]
+ add_path_to_ignore('src/pystencils/gpu')
try:
import waLBerla
except ImportError:
- collect_ignore += [os.path.join(SCRIPT_FOLDER, "pystencils_tests/test_aligned_array.py"),
- os.path.join(SCRIPT_FOLDER, "pystencils_tests/test_datahandling_parallel.py"),
+ collect_ignore += [os.path.join(SCRIPT_FOLDER, "tests/test_aligned_array.py"),
+ os.path.join(SCRIPT_FOLDER, "tests/test_datahandling_parallel.py"),
os.path.join(SCRIPT_FOLDER, "doc/notebooks/03_tutorial_datahandling.ipynb"),
- os.path.join(SCRIPT_FOLDER, "pystencils/datahandling/parallel_datahandling.py"),
- os.path.join(SCRIPT_FOLDER, "pystencils_tests/test_small_block_benchmark.ipynb")]
+ os.path.join(SCRIPT_FOLDER, "src/pystencils/datahandling/parallel_datahandling.py"),
+ os.path.join(SCRIPT_FOLDER, "tests/test_small_block_benchmark.ipynb")]
try:
import blitzdb
except ImportError:
- add_path_to_ignore('pystencils/runhelper')
- collect_ignore += [os.path.join(SCRIPT_FOLDER, "pystencils_tests/test_parameterstudy.py")]
- collect_ignore += [os.path.join(SCRIPT_FOLDER, "pystencils_tests/test_json_serializer.py")]
+ add_path_to_ignore('src/pystencils/runhelper')
+ collect_ignore += [os.path.join(SCRIPT_FOLDER, "tests/test_parameterstudy.py")]
+ collect_ignore += [os.path.join(SCRIPT_FOLDER, "tests/test_json_serializer.py")]
try:
import islpy
except ImportError:
- collect_ignore += [os.path.join(SCRIPT_FOLDER, "pystencils/integer_set_analysis.py")]
+ collect_ignore += [os.path.join(SCRIPT_FOLDER, "src/pystencils/integer_set_analysis.py")]
try:
import graphviz
except ImportError:
- collect_ignore += [os.path.join(SCRIPT_FOLDER, "pystencils/backends/dot.py")]
+ collect_ignore += [os.path.join(SCRIPT_FOLDER, "src/pystencils/backends/dot.py")]
collect_ignore += [os.path.join(SCRIPT_FOLDER, "doc/notebooks/01_tutorial_getting_started.ipynb")]
try:
import pyevtk
except ImportError:
- collect_ignore += [os.path.join(SCRIPT_FOLDER, "pystencils/datahandling/vtk.py")]
+ collect_ignore += [os.path.join(SCRIPT_FOLDER, "src/pystencils/datahandling/vtk.py")]
collect_ignore += [os.path.join(SCRIPT_FOLDER, 'setup.py')]
diff --git a/pyproject.toml b/pyproject.toml
index f815ff304..44dcfbf5a 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -12,7 +12,7 @@ authors = [
]
license = { file = "COPYING.txt" }
requires-python = ">=3.10"
-dependencies = ["sympy>=1.6,<=1.11.1", "numpy>=1.8.0", "appdirs", "joblib"]
+dependencies = ["sympy>=1.6,<=1.11.1", "numpy>=1.8.0", "appdirs", "joblib", "pyyaml"]
classifiers = [
"Development Status :: 4 - Beta",
"Framework :: Jupyter",
@@ -62,12 +62,14 @@ tests = [
'nbformat',
'nbconvert',
'ipython',
+ 'matplotlib',
+ 'py-cpuinfo',
'randomgen>=1.18',
]
[build-system]
requires = [
- "setuptools>=69",
+ "setuptools>=61",
"versioneer>=0.29",
"tomli; python_version < '3.11'",
# 'Cython'
@@ -84,7 +86,7 @@ pystencils = [
]
[tool.setuptools.packages.find]
-where = ["."]
+where = ["src"]
include = ["pystencils", "pystencils.*"]
namespaces = false
@@ -94,7 +96,7 @@ namespaces = false
# resulting files.
VCS = "git"
style = "pep440"
-versionfile_source = "pystencils/_version.py"
+versionfile_source = "src/pystencils/_version.py"
versionfile_build = "pystencils/_version.py"
tag_prefix = "release/"
parentdir_prefix = "pystencils-"
diff --git a/pytest.ini b/pytest.ini
index 143e8aa34..8c445bea6 100644
--- a/pytest.ini
+++ b/pytest.ini
@@ -1,4 +1,6 @@
[pytest]
+testpaths = src tests doc/notebooks
+pythonpath = src
python_files = test_*.py *_test.py scenario_*.py
norecursedirs = *.egg-info .git .cache .ipynb_checkpoints htmlcov
addopts = --doctest-modules --durations=20 --cov-config pytest.ini
@@ -17,20 +19,21 @@ filterwarnings =
[run]
branch = True
-source = pystencils
- pystencils_tests
+source = src/pystencils
+ tests
omit = doc/*
- pystencils_tests/*
+ tests/*
setup.py
+ quicktest.py
conftest.py
versioneer.py
- pystencils/jupytersetup.py
- pystencils/cpu/msvc_detection.py
- pystencils/sympy_gmpy_bug_workaround.py
- pystencils/cache.py
- pystencils/pacxx/benchmark.py
- pystencils/_version.py
+ src/pystencils/jupytersetup.py
+ src/pystencils/cpu/msvc_detection.py
+ src/pystencils/sympy_gmpy_bug_workaround.py
+ src/pystencils/cache.py
+ src/pystencils/pacxx/benchmark.py
+ src/pystencils/_version.py
venv/
[report]
diff --git a/quicktest.py b/quicktest.py
index 04b71cb49..804a70ce9 100644
--- a/quicktest.py
+++ b/quicktest.py
@@ -2,7 +2,7 @@
from contextlib import redirect_stdout
import io
-from pystencils_tests.test_quicktests import (
+from tests.test_quicktests import (
test_basic_kernel,
test_basic_blocking_staggered,
test_basic_vectorization,
diff --git a/setup.py b/setup.py
index 8c99d7c3c..188044a46 100644
--- a/setup.py
+++ b/setup.py
@@ -1,6 +1,12 @@
-import os
+from setuptools import setup, __version__ as setuptools_version
-from setuptools import Extension, setup
+if int(setuptools_version.split('.')[0]) < 61:
+ raise Exception(
+ "[ERROR] pystencils requires at least setuptools version 61 to install.\n"
+ "If this error occurs during an installation via pip, it is likely that there is a conflict between "
+ "versions of setuptools installed by pip and the system package manager. "
+ "In this case, it is recommended to install pystencils into a virtual environment instead."
+ )
import versioneer
diff --git a/pystencils/__init__.py b/src/pystencils/__init__.py
similarity index 100%
rename from pystencils/__init__.py
rename to src/pystencils/__init__.py
diff --git a/pystencils/_version.py b/src/pystencils/_version.py
similarity index 100%
rename from pystencils/_version.py
rename to src/pystencils/_version.py
diff --git a/pystencils/alignedarray.py b/src/pystencils/alignedarray.py
similarity index 100%
rename from pystencils/alignedarray.py
rename to src/pystencils/alignedarray.py
diff --git a/pystencils/assignment.py b/src/pystencils/assignment.py
similarity index 100%
rename from pystencils/assignment.py
rename to src/pystencils/assignment.py
diff --git a/pystencils/astnodes.py b/src/pystencils/astnodes.py
similarity index 100%
rename from pystencils/astnodes.py
rename to src/pystencils/astnodes.py
diff --git a/pystencils/backends/__init__.py b/src/pystencils/backends/__init__.py
similarity index 100%
rename from pystencils/backends/__init__.py
rename to src/pystencils/backends/__init__.py
diff --git a/pystencils/backends/arm_instruction_sets.py b/src/pystencils/backends/arm_instruction_sets.py
similarity index 100%
rename from pystencils/backends/arm_instruction_sets.py
rename to src/pystencils/backends/arm_instruction_sets.py
diff --git a/pystencils/backends/cbackend.py b/src/pystencils/backends/cbackend.py
similarity index 100%
rename from pystencils/backends/cbackend.py
rename to src/pystencils/backends/cbackend.py
diff --git a/pystencils/backends/cuda_backend.py b/src/pystencils/backends/cuda_backend.py
similarity index 100%
rename from pystencils/backends/cuda_backend.py
rename to src/pystencils/backends/cuda_backend.py
diff --git a/pystencils/backends/dot.py b/src/pystencils/backends/dot.py
similarity index 100%
rename from pystencils/backends/dot.py
rename to src/pystencils/backends/dot.py
diff --git a/pystencils/backends/json.py b/src/pystencils/backends/json.py
similarity index 100%
rename from pystencils/backends/json.py
rename to src/pystencils/backends/json.py
diff --git a/pystencils/backends/ppc_instruction_sets.py b/src/pystencils/backends/ppc_instruction_sets.py
similarity index 100%
rename from pystencils/backends/ppc_instruction_sets.py
rename to src/pystencils/backends/ppc_instruction_sets.py
diff --git a/pystencils/backends/riscv_instruction_sets.py b/src/pystencils/backends/riscv_instruction_sets.py
similarity index 100%
rename from pystencils/backends/riscv_instruction_sets.py
rename to src/pystencils/backends/riscv_instruction_sets.py
diff --git a/pystencils/backends/simd_instruction_sets.py b/src/pystencils/backends/simd_instruction_sets.py
similarity index 100%
rename from pystencils/backends/simd_instruction_sets.py
rename to src/pystencils/backends/simd_instruction_sets.py
diff --git a/pystencils/backends/x86_instruction_sets.py b/src/pystencils/backends/x86_instruction_sets.py
similarity index 100%
rename from pystencils/backends/x86_instruction_sets.py
rename to src/pystencils/backends/x86_instruction_sets.py
diff --git a/pystencils/bit_masks.py b/src/pystencils/bit_masks.py
similarity index 100%
rename from pystencils/bit_masks.py
rename to src/pystencils/bit_masks.py
diff --git a/pystencils/boundaries/__init__.py b/src/pystencils/boundaries/__init__.py
similarity index 100%
rename from pystencils/boundaries/__init__.py
rename to src/pystencils/boundaries/__init__.py
diff --git a/pystencils/boundaries/boundaryconditions.py b/src/pystencils/boundaries/boundaryconditions.py
similarity index 100%
rename from pystencils/boundaries/boundaryconditions.py
rename to src/pystencils/boundaries/boundaryconditions.py
diff --git a/pystencils/boundaries/boundaryhandling.py b/src/pystencils/boundaries/boundaryhandling.py
similarity index 100%
rename from pystencils/boundaries/boundaryhandling.py
rename to src/pystencils/boundaries/boundaryhandling.py
diff --git a/pystencils/boundaries/createindexlist.py b/src/pystencils/boundaries/createindexlist.py
similarity index 100%
rename from pystencils/boundaries/createindexlist.py
rename to src/pystencils/boundaries/createindexlist.py
diff --git a/pystencils/boundaries/createindexlistcython.pyx b/src/pystencils/boundaries/createindexlistcython.pyx
similarity index 100%
rename from pystencils/boundaries/createindexlistcython.pyx
rename to src/pystencils/boundaries/createindexlistcython.pyx
diff --git a/pystencils/boundaries/inkernel.py b/src/pystencils/boundaries/inkernel.py
similarity index 100%
rename from pystencils/boundaries/inkernel.py
rename to src/pystencils/boundaries/inkernel.py
diff --git a/pystencils/cache.py b/src/pystencils/cache.py
similarity index 100%
rename from pystencils/cache.py
rename to src/pystencils/cache.py
diff --git a/pystencils/config.py b/src/pystencils/config.py
similarity index 100%
rename from pystencils/config.py
rename to src/pystencils/config.py
diff --git a/pystencils/cpu/__init__.py b/src/pystencils/cpu/__init__.py
similarity index 100%
rename from pystencils/cpu/__init__.py
rename to src/pystencils/cpu/__init__.py
diff --git a/pystencils/cpu/cpujit.py b/src/pystencils/cpu/cpujit.py
similarity index 100%
rename from pystencils/cpu/cpujit.py
rename to src/pystencils/cpu/cpujit.py
diff --git a/pystencils/cpu/kernelcreation.py b/src/pystencils/cpu/kernelcreation.py
similarity index 100%
rename from pystencils/cpu/kernelcreation.py
rename to src/pystencils/cpu/kernelcreation.py
diff --git a/pystencils/cpu/msvc_detection.py b/src/pystencils/cpu/msvc_detection.py
similarity index 100%
rename from pystencils/cpu/msvc_detection.py
rename to src/pystencils/cpu/msvc_detection.py
diff --git a/pystencils/cpu/vectorization.py b/src/pystencils/cpu/vectorization.py
similarity index 100%
rename from pystencils/cpu/vectorization.py
rename to src/pystencils/cpu/vectorization.py
diff --git a/pystencils/datahandling/__init__.py b/src/pystencils/datahandling/__init__.py
similarity index 100%
rename from pystencils/datahandling/__init__.py
rename to src/pystencils/datahandling/__init__.py
diff --git a/pystencils/datahandling/blockiteration.py b/src/pystencils/datahandling/blockiteration.py
similarity index 100%
rename from pystencils/datahandling/blockiteration.py
rename to src/pystencils/datahandling/blockiteration.py
diff --git a/pystencils/datahandling/datahandling_interface.py b/src/pystencils/datahandling/datahandling_interface.py
similarity index 100%
rename from pystencils/datahandling/datahandling_interface.py
rename to src/pystencils/datahandling/datahandling_interface.py
diff --git a/pystencils/datahandling/parallel_datahandling.py b/src/pystencils/datahandling/parallel_datahandling.py
similarity index 100%
rename from pystencils/datahandling/parallel_datahandling.py
rename to src/pystencils/datahandling/parallel_datahandling.py
diff --git a/pystencils/datahandling/serial_datahandling.py b/src/pystencils/datahandling/serial_datahandling.py
similarity index 100%
rename from pystencils/datahandling/serial_datahandling.py
rename to src/pystencils/datahandling/serial_datahandling.py
diff --git a/pystencils/datahandling/vtk.py b/src/pystencils/datahandling/vtk.py
similarity index 100%
rename from pystencils/datahandling/vtk.py
rename to src/pystencils/datahandling/vtk.py
diff --git a/pystencils/display_utils.py b/src/pystencils/display_utils.py
similarity index 100%
rename from pystencils/display_utils.py
rename to src/pystencils/display_utils.py
diff --git a/pystencils/enums.py b/src/pystencils/enums.py
similarity index 100%
rename from pystencils/enums.py
rename to src/pystencils/enums.py
diff --git a/pystencils/fast_approximation.py b/src/pystencils/fast_approximation.py
similarity index 100%
rename from pystencils/fast_approximation.py
rename to src/pystencils/fast_approximation.py
diff --git a/pystencils/fd/__init__.py b/src/pystencils/fd/__init__.py
similarity index 100%
rename from pystencils/fd/__init__.py
rename to src/pystencils/fd/__init__.py
diff --git a/pystencils/fd/derivation.py b/src/pystencils/fd/derivation.py
similarity index 100%
rename from pystencils/fd/derivation.py
rename to src/pystencils/fd/derivation.py
diff --git a/pystencils/fd/derivative.py b/src/pystencils/fd/derivative.py
similarity index 100%
rename from pystencils/fd/derivative.py
rename to src/pystencils/fd/derivative.py
diff --git a/pystencils/fd/finitedifferences.py b/src/pystencils/fd/finitedifferences.py
similarity index 100%
rename from pystencils/fd/finitedifferences.py
rename to src/pystencils/fd/finitedifferences.py
diff --git a/pystencils/fd/finitevolumes.py b/src/pystencils/fd/finitevolumes.py
similarity index 100%
rename from pystencils/fd/finitevolumes.py
rename to src/pystencils/fd/finitevolumes.py
diff --git a/pystencils/fd/spatial.py b/src/pystencils/fd/spatial.py
similarity index 100%
rename from pystencils/fd/spatial.py
rename to src/pystencils/fd/spatial.py
diff --git a/pystencils/field.py b/src/pystencils/field.py
similarity index 100%
rename from pystencils/field.py
rename to src/pystencils/field.py
diff --git a/pystencils/functions.py b/src/pystencils/functions.py
similarity index 100%
rename from pystencils/functions.py
rename to src/pystencils/functions.py
diff --git a/pystencils/gpu/__init__.py b/src/pystencils/gpu/__init__.py
similarity index 100%
rename from pystencils/gpu/__init__.py
rename to src/pystencils/gpu/__init__.py
diff --git a/pystencils/gpu/gpu_array_handler.py b/src/pystencils/gpu/gpu_array_handler.py
similarity index 100%
rename from pystencils/gpu/gpu_array_handler.py
rename to src/pystencils/gpu/gpu_array_handler.py
diff --git a/pystencils/gpu/gpujit.py b/src/pystencils/gpu/gpujit.py
similarity index 100%
rename from pystencils/gpu/gpujit.py
rename to src/pystencils/gpu/gpujit.py
diff --git a/pystencils/gpu/indexing.py b/src/pystencils/gpu/indexing.py
similarity index 100%
rename from pystencils/gpu/indexing.py
rename to src/pystencils/gpu/indexing.py
diff --git a/pystencils/gpu/kernelcreation.py b/src/pystencils/gpu/kernelcreation.py
similarity index 100%
rename from pystencils/gpu/kernelcreation.py
rename to src/pystencils/gpu/kernelcreation.py
diff --git a/pystencils/gpu/periodicity.py b/src/pystencils/gpu/periodicity.py
similarity index 100%
rename from pystencils/gpu/periodicity.py
rename to src/pystencils/gpu/periodicity.py
diff --git a/pystencils/include/PyStencilsField.h b/src/pystencils/include/PyStencilsField.h
similarity index 100%
rename from pystencils/include/PyStencilsField.h
rename to src/pystencils/include/PyStencilsField.h
diff --git a/pystencils/include/__init__.py b/src/pystencils/include/__init__.py
similarity index 100%
rename from pystencils/include/__init__.py
rename to src/pystencils/include/__init__.py
diff --git a/pystencils/include/aesni_rand.h b/src/pystencils/include/aesni_rand.h
similarity index 100%
rename from pystencils/include/aesni_rand.h
rename to src/pystencils/include/aesni_rand.h
diff --git a/pystencils/include/arm_neon_helpers.h b/src/pystencils/include/arm_neon_helpers.h
similarity index 100%
rename from pystencils/include/arm_neon_helpers.h
rename to src/pystencils/include/arm_neon_helpers.h
diff --git a/pystencils/include/gpu_defines.h b/src/pystencils/include/gpu_defines.h
similarity index 100%
rename from pystencils/include/gpu_defines.h
rename to src/pystencils/include/gpu_defines.h
diff --git a/pystencils/include/half_precision.h b/src/pystencils/include/half_precision.h
similarity index 100%
rename from pystencils/include/half_precision.h
rename to src/pystencils/include/half_precision.h
diff --git a/pystencils/include/myintrin.h b/src/pystencils/include/myintrin.h
similarity index 100%
rename from pystencils/include/myintrin.h
rename to src/pystencils/include/myintrin.h
diff --git a/pystencils/include/philox_rand.h b/src/pystencils/include/philox_rand.h
similarity index 100%
rename from pystencils/include/philox_rand.h
rename to src/pystencils/include/philox_rand.h
diff --git a/pystencils/include/ppc_altivec_helpers.h b/src/pystencils/include/ppc_altivec_helpers.h
similarity index 100%
rename from pystencils/include/ppc_altivec_helpers.h
rename to src/pystencils/include/ppc_altivec_helpers.h
diff --git a/pystencils/integer_functions.py b/src/pystencils/integer_functions.py
similarity index 100%
rename from pystencils/integer_functions.py
rename to src/pystencils/integer_functions.py
diff --git a/pystencils/integer_set_analysis.py b/src/pystencils/integer_set_analysis.py
similarity index 100%
rename from pystencils/integer_set_analysis.py
rename to src/pystencils/integer_set_analysis.py
diff --git a/pystencils/jupyter.py b/src/pystencils/jupyter.py
similarity index 100%
rename from pystencils/jupyter.py
rename to src/pystencils/jupyter.py
diff --git a/pystencils/kernel_contrains_check.py b/src/pystencils/kernel_contrains_check.py
similarity index 100%
rename from pystencils/kernel_contrains_check.py
rename to src/pystencils/kernel_contrains_check.py
diff --git a/pystencils/kernel_decorator.py b/src/pystencils/kernel_decorator.py
similarity index 100%
rename from pystencils/kernel_decorator.py
rename to src/pystencils/kernel_decorator.py
diff --git a/pystencils/kernel_wrapper.py b/src/pystencils/kernel_wrapper.py
similarity index 100%
rename from pystencils/kernel_wrapper.py
rename to src/pystencils/kernel_wrapper.py
diff --git a/pystencils/kernelcreation.py b/src/pystencils/kernelcreation.py
similarity index 100%
rename from pystencils/kernelcreation.py
rename to src/pystencils/kernelcreation.py
diff --git a/pystencils/node_collection.py b/src/pystencils/node_collection.py
similarity index 100%
rename from pystencils/node_collection.py
rename to src/pystencils/node_collection.py
diff --git a/pystencils/placeholder_function.py b/src/pystencils/placeholder_function.py
similarity index 100%
rename from pystencils/placeholder_function.py
rename to src/pystencils/placeholder_function.py
diff --git a/pystencils/plot.py b/src/pystencils/plot.py
similarity index 100%
rename from pystencils/plot.py
rename to src/pystencils/plot.py
diff --git a/pystencils/rng.py b/src/pystencils/rng.py
similarity index 100%
rename from pystencils/rng.py
rename to src/pystencils/rng.py
diff --git a/pystencils/runhelper/__init__.py b/src/pystencils/runhelper/__init__.py
similarity index 100%
rename from pystencils/runhelper/__init__.py
rename to src/pystencils/runhelper/__init__.py
diff --git a/pystencils/runhelper/db.py b/src/pystencils/runhelper/db.py
similarity index 100%
rename from pystencils/runhelper/db.py
rename to src/pystencils/runhelper/db.py
diff --git a/pystencils/runhelper/parameterstudy.py b/src/pystencils/runhelper/parameterstudy.py
similarity index 100%
rename from pystencils/runhelper/parameterstudy.py
rename to src/pystencils/runhelper/parameterstudy.py
diff --git a/pystencils/session.py b/src/pystencils/session.py
similarity index 100%
rename from pystencils/session.py
rename to src/pystencils/session.py
diff --git a/pystencils/simp/__init__.py b/src/pystencils/simp/__init__.py
similarity index 100%
rename from pystencils/simp/__init__.py
rename to src/pystencils/simp/__init__.py
diff --git a/pystencils/simp/assignment_collection.py b/src/pystencils/simp/assignment_collection.py
similarity index 100%
rename from pystencils/simp/assignment_collection.py
rename to src/pystencils/simp/assignment_collection.py
diff --git a/pystencils/simp/simplifications.py b/src/pystencils/simp/simplifications.py
similarity index 100%
rename from pystencils/simp/simplifications.py
rename to src/pystencils/simp/simplifications.py
diff --git a/pystencils/simp/simplificationstrategy.py b/src/pystencils/simp/simplificationstrategy.py
similarity index 100%
rename from pystencils/simp/simplificationstrategy.py
rename to src/pystencils/simp/simplificationstrategy.py
diff --git a/pystencils/simp/subexpression_insertion.py b/src/pystencils/simp/subexpression_insertion.py
similarity index 100%
rename from pystencils/simp/subexpression_insertion.py
rename to src/pystencils/simp/subexpression_insertion.py
diff --git a/pystencils/simplificationfactory.py b/src/pystencils/simplificationfactory.py
similarity index 100%
rename from pystencils/simplificationfactory.py
rename to src/pystencils/simplificationfactory.py
diff --git a/pystencils/slicing.py b/src/pystencils/slicing.py
similarity index 100%
rename from pystencils/slicing.py
rename to src/pystencils/slicing.py
diff --git a/pystencils/spatial_coordinates.py b/src/pystencils/spatial_coordinates.py
similarity index 100%
rename from pystencils/spatial_coordinates.py
rename to src/pystencils/spatial_coordinates.py
diff --git a/pystencils/stencil.py b/src/pystencils/stencil.py
similarity index 100%
rename from pystencils/stencil.py
rename to src/pystencils/stencil.py
diff --git a/pystencils/sympyextensions.py b/src/pystencils/sympyextensions.py
similarity index 100%
rename from pystencils/sympyextensions.py
rename to src/pystencils/sympyextensions.py
diff --git a/pystencils/timeloop.py b/src/pystencils/timeloop.py
similarity index 100%
rename from pystencils/timeloop.py
rename to src/pystencils/timeloop.py
diff --git a/pystencils/transformations.py b/src/pystencils/transformations.py
similarity index 100%
rename from pystencils/transformations.py
rename to src/pystencils/transformations.py
diff --git a/pystencils/typing/__init__.py b/src/pystencils/typing/__init__.py
similarity index 100%
rename from pystencils/typing/__init__.py
rename to src/pystencils/typing/__init__.py
diff --git a/pystencils/typing/cast_functions.py b/src/pystencils/typing/cast_functions.py
similarity index 100%
rename from pystencils/typing/cast_functions.py
rename to src/pystencils/typing/cast_functions.py
diff --git a/pystencils/typing/leaf_typing.py b/src/pystencils/typing/leaf_typing.py
similarity index 100%
rename from pystencils/typing/leaf_typing.py
rename to src/pystencils/typing/leaf_typing.py
diff --git a/pystencils/typing/transformations.py b/src/pystencils/typing/transformations.py
similarity index 100%
rename from pystencils/typing/transformations.py
rename to src/pystencils/typing/transformations.py
diff --git a/pystencils/typing/typed_sympy.py b/src/pystencils/typing/typed_sympy.py
similarity index 100%
rename from pystencils/typing/typed_sympy.py
rename to src/pystencils/typing/typed_sympy.py
diff --git a/pystencils/typing/types.py b/src/pystencils/typing/types.py
similarity index 100%
rename from pystencils/typing/types.py
rename to src/pystencils/typing/types.py
diff --git a/pystencils/typing/utilities.py b/src/pystencils/typing/utilities.py
similarity index 100%
rename from pystencils/typing/utilities.py
rename to src/pystencils/typing/utilities.py
diff --git a/pystencils/utils.py b/src/pystencils/utils.py
similarity index 100%
rename from pystencils/utils.py
rename to src/pystencils/utils.py
diff --git a/pystencils_tests/__init__.py b/tests/__init__.py
similarity index 100%
rename from pystencils_tests/__init__.py
rename to tests/__init__.py
diff --git a/pystencils_tests/test_Min_Max.py b/tests/test_Min_Max.py
similarity index 100%
rename from pystencils_tests/test_Min_Max.py
rename to tests/test_Min_Max.py
diff --git a/pystencils_tests/test_abs.py b/tests/test_abs.py
similarity index 100%
rename from pystencils_tests/test_abs.py
rename to tests/test_abs.py
diff --git a/pystencils_tests/test_address_of.py b/tests/test_address_of.py
similarity index 100%
rename from pystencils_tests/test_address_of.py
rename to tests/test_address_of.py
diff --git a/pystencils_tests/test_aligned_array.py b/tests/test_aligned_array.py
similarity index 100%
rename from pystencils_tests/test_aligned_array.py
rename to tests/test_aligned_array.py
diff --git a/pystencils_tests/test_assignment_collection.py b/tests/test_assignment_collection.py
similarity index 100%
rename from pystencils_tests/test_assignment_collection.py
rename to tests/test_assignment_collection.py
diff --git a/pystencils_tests/test_assignment_collection_dict_conversion.py b/tests/test_assignment_collection_dict_conversion.py
similarity index 100%
rename from pystencils_tests/test_assignment_collection_dict_conversion.py
rename to tests/test_assignment_collection_dict_conversion.py
diff --git a/pystencils_tests/test_assignment_from_stencil.py b/tests/test_assignment_from_stencil.py
similarity index 100%
rename from pystencils_tests/test_assignment_from_stencil.py
rename to tests/test_assignment_from_stencil.py
diff --git a/pystencils_tests/test_astnodes.py b/tests/test_astnodes.py
similarity index 100%
rename from pystencils_tests/test_astnodes.py
rename to tests/test_astnodes.py
diff --git a/pystencils_tests/test_augmented_assignment.py b/tests/test_augmented_assignment.py
similarity index 100%
rename from pystencils_tests/test_augmented_assignment.py
rename to tests/test_augmented_assignment.py
diff --git a/pystencils_tests/test_base_pointer_specification.py b/tests/test_base_pointer_specification.py
similarity index 100%
rename from pystencils_tests/test_base_pointer_specification.py
rename to tests/test_base_pointer_specification.py
diff --git a/pystencils_tests/test_bit_masks.py b/tests/test_bit_masks.py
similarity index 100%
rename from pystencils_tests/test_bit_masks.py
rename to tests/test_bit_masks.py
diff --git a/pystencils_tests/test_blocking.py b/tests/test_blocking.py
similarity index 100%
rename from pystencils_tests/test_blocking.py
rename to tests/test_blocking.py
diff --git a/pystencils_tests/test_blocking_staggered.py b/tests/test_blocking_staggered.py
similarity index 100%
rename from pystencils_tests/test_blocking_staggered.py
rename to tests/test_blocking_staggered.py
diff --git a/pystencils_tests/test_boundary.py b/tests/test_boundary.py
similarity index 100%
rename from pystencils_tests/test_boundary.py
rename to tests/test_boundary.py
diff --git a/pystencils_tests/test_boundary_indexlist_creation.py b/tests/test_boundary_indexlist_creation.py
similarity index 100%
rename from pystencils_tests/test_boundary_indexlist_creation.py
rename to tests/test_boundary_indexlist_creation.py
diff --git a/pystencils_tests/test_buffer.py b/tests/test_buffer.py
similarity index 100%
rename from pystencils_tests/test_buffer.py
rename to tests/test_buffer.py
diff --git a/pystencils_tests/test_buffer_gpu.py b/tests/test_buffer_gpu.py
similarity index 100%
rename from pystencils_tests/test_buffer_gpu.py
rename to tests/test_buffer_gpu.py
diff --git a/pystencils_tests/test_conditional_field_access.py b/tests/test_conditional_field_access.py
similarity index 100%
rename from pystencils_tests/test_conditional_field_access.py
rename to tests/test_conditional_field_access.py
diff --git a/pystencils_tests/test_conditional_vec.py b/tests/test_conditional_vec.py
similarity index 100%
rename from pystencils_tests/test_conditional_vec.py
rename to tests/test_conditional_vec.py
diff --git a/pystencils_tests/test_config.py b/tests/test_config.py
similarity index 100%
rename from pystencils_tests/test_config.py
rename to tests/test_config.py
diff --git a/pystencils_tests/test_create_kernel_config.py b/tests/test_create_kernel_config.py
similarity index 100%
rename from pystencils_tests/test_create_kernel_config.py
rename to tests/test_create_kernel_config.py
diff --git a/pystencils_tests/test_custom_backends.py b/tests/test_custom_backends.py
similarity index 100%
rename from pystencils_tests/test_custom_backends.py
rename to tests/test_custom_backends.py
diff --git a/pystencils_tests/test_data/datahandling_load_test.npz b/tests/test_data/datahandling_load_test.npz
similarity index 100%
rename from pystencils_tests/test_data/datahandling_load_test.npz
rename to tests/test_data/datahandling_load_test.npz
diff --git a/pystencils_tests/test_data/datahandling_parallel_load_test/dst.dat b/tests/test_data/datahandling_parallel_load_test/dst.dat
similarity index 100%
rename from pystencils_tests/test_data/datahandling_parallel_load_test/dst.dat
rename to tests/test_data/datahandling_parallel_load_test/dst.dat
diff --git a/pystencils_tests/test_data/datahandling_parallel_load_test/src.dat b/tests/test_data/datahandling_parallel_load_test/src.dat
similarity index 100%
rename from pystencils_tests/test_data/datahandling_parallel_load_test/src.dat
rename to tests/test_data/datahandling_parallel_load_test/src.dat
diff --git a/pystencils_tests/test_data/datahandling_parallel_save_test/dst.dat b/tests/test_data/datahandling_parallel_save_test/dst.dat
similarity index 100%
rename from pystencils_tests/test_data/datahandling_parallel_save_test/dst.dat
rename to tests/test_data/datahandling_parallel_save_test/dst.dat
diff --git a/pystencils_tests/test_data/datahandling_parallel_save_test/src.dat b/tests/test_data/datahandling_parallel_save_test/src.dat
similarity index 100%
rename from pystencils_tests/test_data/datahandling_parallel_save_test/src.dat
rename to tests/test_data/datahandling_parallel_save_test/src.dat
diff --git a/pystencils_tests/test_data/datahandling_save_test.npz b/tests/test_data/datahandling_save_test.npz
similarity index 100%
rename from pystencils_tests/test_data/datahandling_save_test.npz
rename to tests/test_data/datahandling_save_test.npz
diff --git a/pystencils_tests/test_data/lenna.png b/tests/test_data/lenna.png
similarity index 100%
rename from pystencils_tests/test_data/lenna.png
rename to tests/test_data/lenna.png
diff --git a/pystencils_tests/test_data/test_vessel2d_mask.png b/tests/test_data/test_vessel2d_mask.png
similarity index 100%
rename from pystencils_tests/test_data/test_vessel2d_mask.png
rename to tests/test_data/test_vessel2d_mask.png
diff --git a/pystencils_tests/test_datahandling.py b/tests/test_datahandling.py
similarity index 100%
rename from pystencils_tests/test_datahandling.py
rename to tests/test_datahandling.py
diff --git a/pystencils_tests/test_datahandling_parallel.py b/tests/test_datahandling_parallel.py
similarity index 99%
rename from pystencils_tests/test_datahandling_parallel.py
rename to tests/test_datahandling_parallel.py
index b5aa98324..f572cf326 100644
--- a/pystencils_tests/test_datahandling_parallel.py
+++ b/tests/test_datahandling_parallel.py
@@ -11,7 +11,7 @@ from pystencils.slicing import slice_from_direction
from pystencils.datahandling.parallel_datahandling import ParallelDataHandling
from pystencils.datahandling import create_data_handling
-from pystencils_tests.test_datahandling import (
+from tests.test_datahandling import (
access_and_gather, kernel_execution_jacobi, reduction, synchronization, vtk_output)
SCRIPT_FOLDER = Path(__file__).parent.absolute()
diff --git a/pystencils_tests/test_derivative.py b/tests/test_derivative.py
similarity index 100%
rename from pystencils_tests/test_derivative.py
rename to tests/test_derivative.py
diff --git a/pystencils_tests/test_dot_printer.ipynb b/tests/test_dot_printer.ipynb
similarity index 100%
rename from pystencils_tests/test_dot_printer.ipynb
rename to tests/test_dot_printer.ipynb
diff --git a/pystencils_tests/test_dot_printer.py b/tests/test_dot_printer.py
similarity index 100%
rename from pystencils_tests/test_dot_printer.py
rename to tests/test_dot_printer.py
diff --git a/pystencils_tests/test_dtype_check.py b/tests/test_dtype_check.py
similarity index 100%
rename from pystencils_tests/test_dtype_check.py
rename to tests/test_dtype_check.py
diff --git a/pystencils_tests/test_fast_approximation.py b/tests/test_fast_approximation.py
similarity index 100%
rename from pystencils_tests/test_fast_approximation.py
rename to tests/test_fast_approximation.py
diff --git a/pystencils_tests/test_fd_derivation.ipynb b/tests/test_fd_derivation.ipynb
similarity index 100%
rename from pystencils_tests/test_fd_derivation.ipynb
rename to tests/test_fd_derivation.ipynb
diff --git a/pystencils_tests/test_fd_derivation_via_rotation.ipynb b/tests/test_fd_derivation_via_rotation.ipynb
similarity index 100%
rename from pystencils_tests/test_fd_derivation_via_rotation.ipynb
rename to tests/test_fd_derivation_via_rotation.ipynb
diff --git a/pystencils_tests/test_fd_derivative.py b/tests/test_fd_derivative.py
similarity index 100%
rename from pystencils_tests/test_fd_derivative.py
rename to tests/test_fd_derivative.py
diff --git a/pystencils_tests/test_field.py b/tests/test_field.py
similarity index 100%
rename from pystencils_tests/test_field.py
rename to tests/test_field.py
diff --git a/pystencils_tests/test_field_access_poly.py b/tests/test_field_access_poly.py
similarity index 100%
rename from pystencils_tests/test_field_access_poly.py
rename to tests/test_field_access_poly.py
diff --git a/pystencils_tests/test_field_equality.ipynb b/tests/test_field_equality.ipynb
similarity index 100%
rename from pystencils_tests/test_field_equality.ipynb
rename to tests/test_field_equality.ipynb
diff --git a/pystencils_tests/test_finite_differences.py b/tests/test_finite_differences.py
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