Cannot install requirements with Python 3.13
Seems related to numpy. Hopefully bumping numpy fixes the issue.
python3 --version
Python 3.13.2python3 -m pip install -r requirements.txt
Looking in indexes: https://pypi.org/simple, https://test.pypi.org/simple/
Collecting ndim@ https://github.com/sigma-py/ndim/archive/refs/tags/v0.1.6.tar.gz (from -r requirements.txt (line 4))
Using cached https://github.com/sigma-py/ndim/archive/refs/tags/v0.1.6.tar.gz
Installing build dependencies ... done
Getting requirements to build wheel ... done
Installing backend dependencies ... done
Preparing metadata (pyproject.toml) ... done
Collecting pystencils@ git+https://i10git.cs.fau.de/hyteg/pystencils.git@4a790e1c48f32c07fc4058de9b20734bcea9cca0 (from -r requirements.txt (line 7))
Cloning https://i10git.cs.fau.de/hyteg/pystencils.git (to revision 4a790e1c48f32c07fc4058de9b20734bcea9cca0) to /tmp/pip-install-fxr0c5k1/pystencils_30e710821f174caba2d07e330d319fbd
Running command git clone --filter=blob:none --quiet https://i10git.cs.fau.de/hyteg/pystencils.git /tmp/pip-install-fxr0c5k1/pystencils_30e710821f174caba2d07e330d319fbd
Running command git rev-parse -q --verify 'sha^4a790e1c48f32c07fc4058de9b20734bcea9cca0'
Running command git fetch -q https://i10git.cs.fau.de/hyteg/pystencils.git 4a790e1c48f32c07fc4058de9b20734bcea9cca0
Running command git checkout -q 4a790e1c48f32c07fc4058de9b20734bcea9cca0
Resolved https://i10git.cs.fau.de/hyteg/pystencils.git to commit 4a790e1c48f32c07fc4058de9b20734bcea9cca0
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing metadata (pyproject.toml) ... done
Collecting islpy (from -r requirements.txt (line 3))
Using cached islpy-2025.1.5-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.3 kB)
Collecting numpy==1.24.3 (from -r requirements.txt (line 5))
Using cached numpy-1.24.3.tar.gz (10.9 MB)
Installing build dependencies ... done
Getting requirements to build wheel ... done
[notice] A new release of pip is available: 24.3.1 -> 25.0.1
[notice] To update, run: pip install --upgrade pip
ERROR: Exception:
Traceback (most recent call last):
File "/home/daniel/documents/uni/phd/code/hog-main/.venv/lib64/python3.13/site-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper
status = _inner_run()
File "/home/daniel/documents/uni/phd/code/hog-main/.venv/lib64/python3.13/site-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run
return self.run(options, args)
~~~~~~~~^^^^^^^^^^^^^^^
File "/home/daniel/documents/uni/phd/code/hog-main/.venv/lib64/python3.13/site-packages/pip/_internal/cli/req_command.py", line 67, in wrapper
return func(self, options, args)
File "/home/daniel/documents/uni/phd/code/hog-main/.venv/lib64/python3.13/site-packages/pip/_internal/commands/install.py", line 379, in run
requirement_set = resolver.resolve(
reqs, check_supported_wheels=not options.target_dir
)
File "/home/daniel/documents/uni/phd/code/hog-main/.venv/lib64/python3.13/site-packages/pip/_internal/resolution/resolvelib/resolver.py", line 95, in resolve
result = self._result = resolver.resolve(
~~~~~~~~~~~~~~~~^
collected.requirements, max_rounds=limit_how_complex_resolution_can_be
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
)
^
File "/home/daniel/documents/uni/phd/code/hog-main/.venv/lib64/python3.13/site-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve
state = resolution.resolve(requirements, max_rounds=max_rounds)
File "/home/daniel/documents/uni/phd/code/hog-main/.venv/lib64/python3.13/site-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve
self._add_to_criteria(self.state.criteria, r, parent=None)
~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/daniel/documents/uni/phd/code/hog-main/.venv/lib64/python3.13/site-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria
if not criterion.candidates:
^^^^^^^^^^^^^^^^^^^^
File "/home/daniel/documents/uni/phd/code/hog-main/.venv/lib64/python3.13/site-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__
return bool(self._sequence)
File "/home/daniel/documents/uni/phd/code/hog-main/.venv/lib64/python3.13/site-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 174, in __bool__
return any(self)
File "/home/daniel/documents/uni/phd/code/hog-main/.venv/lib64/python3.13/site-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 162, in <genexpr>
return (c for c in iterator if id(c) not in self._incompatible_ids)
^^^^^^^^
File "/home/daniel/documents/uni/phd/code/hog-main/.venv/lib64/python3.13/site-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 53, in _iter_built
candidate = func()
File "/home/daniel/documents/uni/phd/code/hog-main/.venv/lib64/python3.13/site-packages/pip/_internal/resolution/resolvelib/factory.py", line 187, in _make_candidate_from_link
base: Optional[BaseCandidate] = self._make_base_candidate_from_link(
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
link, template, name, version
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
)
^
File "/home/daniel/documents/uni/phd/code/hog-main/.venv/lib64/python3.13/site-packages/pip/_internal/resolution/resolvelib/factory.py", line 233, in _make_base_candidate_from_link
self._link_candidate_cache[link] = LinkCandidate(
~~~~~~~~~~~~~^
link,
^^^^^
...<3 lines>...
version=version,
^^^^^^^^^^^^^^^^
)
^
File "/home/daniel/documents/uni/phd/code/hog-main/.venv/lib64/python3.13/site-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in __init__
super().__init__(
~~~~~~~~~~~~~~~~^
link=link,
^^^^^^^^^^
...<4 lines>...
version=version,
^^^^^^^^^^^^^^^^
)
^
File "/home/daniel/documents/uni/phd/code/hog-main/.venv/lib64/python3.13/site-packages/pip/_internal/resolution/resolvelib/candidates.py", line 159, in __init__
self.dist = self._prepare()
~~~~~~~~~~~~~^^
File "/home/daniel/documents/uni/phd/code/hog-main/.venv/lib64/python3.13/site-packages/pip/_internal/resolution/resolvelib/candidates.py", line 236, in _prepare
dist = self._prepare_distribution()
File "/home/daniel/documents/uni/phd/code/hog-main/.venv/lib64/python3.13/site-packages/pip/_internal/resolution/resolvelib/candidates.py", line 315, in _prepare_distribution
return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/daniel/documents/uni/phd/code/hog-main/.venv/lib64/python3.13/site-packages/pip/_internal/operations/prepare.py", line 527, in prepare_linked_requirement
return self._prepare_linked_requirement(req, parallel_builds)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^
File "/home/daniel/documents/uni/phd/code/hog-main/.venv/lib64/python3.13/site-packages/pip/_internal/operations/prepare.py", line 642, in _prepare_linked_requirement
dist = _get_prepared_distribution(
req,
...<3 lines>...
self.check_build_deps,
)
File "/home/daniel/documents/uni/phd/code/hog-main/.venv/lib64/python3.13/site-packages/pip/_internal/operations/prepare.py", line 72, in _get_prepared_distribution
abstract_dist.prepare_distribution_metadata(
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
finder, build_isolation, check_build_deps
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
)
^
File "/home/daniel/documents/uni/phd/code/hog-main/.venv/lib64/python3.13/site-packages/pip/_internal/distributions/sdist.py", line 56, in prepare_distribution_metadata
self._install_build_reqs(finder)
~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^
File "/home/daniel/documents/uni/phd/code/hog-main/.venv/lib64/python3.13/site-packages/pip/_internal/distributions/sdist.py", line 126, in _install_build_reqs
build_reqs = self._get_build_requires_wheel()
File "/home/daniel/documents/uni/phd/code/hog-main/.venv/lib64/python3.13/site-packages/pip/_internal/distributions/sdist.py", line 103, in _get_build_requires_wheel
return backend.get_requires_for_build_wheel()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^
File "/home/daniel/documents/uni/phd/code/hog-main/.venv/lib64/python3.13/site-packages/pip/_internal/utils/misc.py", line 701, in get_requires_for_build_wheel
return super().get_requires_for_build_wheel(config_settings=cs)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^
File "/home/daniel/documents/uni/phd/code/hog-main/.venv/lib64/python3.13/site-packages/pip/_vendor/pyproject_hooks/_impl.py", line 166, in get_requires_for_build_wheel
return self._call_hook('get_requires_for_build_wheel', {
~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
'config_settings': config_settings
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
})
^^
File "/home/daniel/documents/uni/phd/code/hog-main/.venv/lib64/python3.13/site-packages/pip/_vendor/pyproject_hooks/_impl.py", line 321, in _call_hook
raise BackendUnavailable(data.get('traceback', ''))
pip._vendor.pyproject_hooks._impl.BackendUnavailable: Traceback (most recent call last):
File "/home/daniel/documents/uni/phd/code/hog-main/.venv/lib64/python3.13/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 77, in _build_backend
obj = import_module(mod_path)
File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "<frozen importlib._bootstrap>", line 1387, in _gcd_import
File "<frozen importlib._bootstrap>", line 1360, in _find_and_load
File "<frozen importlib._bootstrap>", line 1310, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed
File "<frozen importlib._bootstrap>", line 1387, in _gcd_import
File "<frozen importlib._bootstrap>", line 1360, in _find_and_load
File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 935, in _load_unlocked
File "<frozen importlib._bootstrap_external>", line 1026, in exec_module
File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed
File "/tmp/pip-build-env-mvxnvfes/overlay/lib/python3.13/site-packages/setuptools/__init__.py", line 10, in <module>
import distutils.core
ModuleNotFoundError: No module named 'distutils'